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The map label for this gene is yfdE [H]

Identifier: 138894836

GI number: 138894836

Start: 1242024

End: 1243097

Strand: Direct

Name: yfdE [H]

Synonym: GTNG_1172

Alternate gene names: 138894836

Gene position: 1242024-1243097 (Clockwise)

Preceding gene: 138894835

Following gene: 138894837

Centisome position: 34.98

GC content: 57.36

Gene sequence:

>1074_bases
ATGCTGAATGGCGTTGTTGTGCTTGACTTTTCTCATTACTTGCCCGGCCCGTTTGCGAGCTGGCGTCTTGCCCAGCTTGG
AGCCGAAGTCATTAAGATCGAGCCCCCATCTGGTGACCGGCTGCGTCCGTTCGCTGGTGGGAAGTTGTTTGCCTCGTACA
ATACCGGCAAAAAAAGCGTCGCCTTGGACTTAAAGACGGACGGGGGGCGCGAACAAGCCAGGCGTCTCGCCGCTCGTGCC
GATGTGTTGATCGAGAGCTTCCGTCCCGGAGTGATGGCGCGGCTCGGGCTTGGTTATAACGACATTTGCTGCATAAACGA
GCGCATCATCTACTGTTCGATCAGCGGTTTCGGTCAACAGAGTGATCGCTCGTTGCTTGGAAGCCATGACGTAAATTATA
TGGCGCTTTCGGGAGTACTTGCGCAGTTGGTGGATAAAAGTGGCCGCCCGGTTCATCCAAAAGTGACGTTCGCTGATTTT
ATTGGTGGCATGGCGGCGGCCGAGCGCATTTTAGCTGCACTGTTTGCCCGCGAGCGAACCGGCAAAGGCGCACATTTGGA
TGTCTCGCTTGTCGACGGCTTAACAGCAATGATGGCCGGCCATTTTGCCATCGAGCATGGCGGAGGGCCAAAAAACGGCC
TTATGGAGCTTGCCGGGGAGGTCGTCTGTTACCAGTTATACGAGACAAAAGATGGCCGCTATATGAGCTTGGCCGCGCTT
GAACCGCACTTTTGGCGCCAGTTTTGTGAAGCGGTTGGCCGCCCGGAGTGGACCGAAGCGCAGTGGGCGCCGGCTCGTCC
GGGAGAGGCGGTATATGACGGGCTGGTCGCTTTGTTTCGCGAAAAAACGTTTTCTGAATGGAGCGCCTTTGCTGAAACGG
TTGACGCTTGCCTCGCCCCAGTGCTCGAAACGGATGAAGCGAAGCAGCTGTTTGCCGACGACCGGCTTCGTCATCTTGTT
CGGCTGCAGCCAGATGGCGTGTGGGCGGCCGCGCATGGGCCGGATGGGCAGTGGGGCGGCGGAGTGTCGCCACAAGTGAA
CGAACACGCATATTTATTGGTGGGGGAGGAATGA

Upstream 100 bases:

>100_bases
CTATCGCGATATTCCAGTGAGCGCCATTTACGCCGGAACGAACGAGATGATGAAAACGATCATCGCCCGGCAGCTAGACT
TATAGAAAGAGGGACACACC

Downstream 100 bases:

>100_bases
CCATGATGAAAACACCGTTAAACATTTCGATGATGCTTGAGCGGGCGGAAATGTTTTTTCCGAAAAAGCAAGTCGTCTCC
CGCATGAAAGGCGGCATCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MLNGVVVLDFSHYLPGPFASWRLAQLGAEVIKIEPPSGDRLRPFAGGKLFASYNTGKKSVALDLKTDGGREQARRLAARA
DVLIESFRPGVMARLGLGYNDICCINERIIYCSISGFGQQSDRSLLGSHDVNYMALSGVLAQLVDKSGRPVHPKVTFADF
IGGMAAAERILAALFARERTGKGAHLDVSLVDGLTAMMAGHFAIEHGGGPKNGLMELAGEVVCYQLYETKDGRYMSLAAL
EPHFWRQFCEAVGRPEWTEAQWAPARPGEAVYDGLVALFREKTFSEWSAFAETVDACLAPVLETDEAKQLFADDRLRHLV
RLQPDGVWAAAHGPDGQWGGGVSPQVNEHAYLLVGEE

Sequences:

>Translated_357_residues
MLNGVVVLDFSHYLPGPFASWRLAQLGAEVIKIEPPSGDRLRPFAGGKLFASYNTGKKSVALDLKTDGGREQARRLAARA
DVLIESFRPGVMARLGLGYNDICCINERIIYCSISGFGQQSDRSLLGSHDVNYMALSGVLAQLVDKSGRPVHPKVTFADF
IGGMAAAERILAALFARERTGKGAHLDVSLVDGLTAMMAGHFAIEHGGGPKNGLMELAGEVVCYQLYETKDGRYMSLAAL
EPHFWRQFCEAVGRPEWTEAQWAPARPGEAVYDGLVALFREKTFSEWSAFAETVDACLAPVLETDEAKQLFADDRLRHLV
RLQPDGVWAAAHGPDGQWGGGVSPQVNEHAYLLVGEE
>Mature_357_residues
MLNGVVVLDFSHYLPGPFASWRLAQLGAEVIKIEPPSGDRLRPFAGGKLFASYNTGKKSVALDLKTDGGREQARRLAARA
DVLIESFRPGVMARLGLGYNDICCINERIIYCSISGFGQQSDRSLLGSHDVNYMALSGVLAQLVDKSGRPVHPKVTFADF
IGGMAAAERILAALFARERTGKGAHLDVSLVDGLTAMMAGHFAIEHGGGPKNGLMELAGEVVCYQLYETKDGRYMSLAAL
EPHFWRQFCEAVGRPEWTEAQWAPARPGEAVYDGLVALFREKTFSEWSAFAETVDACLAPVLETDEAKQLFADDRLRHLV
RLQPDGVWAAAHGPDGQWGGGVSPQVNEHAYLLVGEE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=310, Percent_Identity=35.8064516129032, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI266456254, Length=310, Percent_Identity=35.8064516129032, Blast_Score=169, Evalue=3e-42,
Organism=Homo sapiens, GI300863128, Length=331, Percent_Identity=32.9305135951662, Blast_Score=156, Evalue=2e-38,
Organism=Homo sapiens, GI300863124, Length=326, Percent_Identity=33.1288343558282, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI266458393, Length=256, Percent_Identity=37.890625, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=38.7096774193548, Blast_Score=151, Evalue=9e-37,
Organism=Homo sapiens, GI300863126, Length=146, Percent_Identity=43.1506849315069, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=28.5276073619632, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=43.0656934306569, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=43.0656934306569, Blast_Score=99, Evalue=6e-21,
Organism=Escherichia coli, GI87082093, Length=319, Percent_Identity=30.4075235109718, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788717, Length=352, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI115535051, Length=311, Percent_Identity=31.1897106109325, Blast_Score=143, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI32564160, Length=314, Percent_Identity=30.8917197452229, Blast_Score=141, Evalue=7e-34,
Organism=Drosophila melanogaster, GI24585488, Length=313, Percent_Identity=37.6996805111821, Blast_Score=181, Evalue=7e-46,
Organism=Drosophila melanogaster, GI24648431, Length=248, Percent_Identity=34.2741935483871, Blast_Score=124, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38849; Mature: 38849

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNGVVVLDFSHYLPGPFASWRLAQLGAEVIKIEPPSGDRLRPFAGGKLFASYNTGKKSV
CCCCEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEE
ALDLKTDGGREQARRLAARADVLIESFRPGVMARLGLGYNDICCINERIIYCSISGFGQQ
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCEEEEEEECCCCCC
SDRSLLGSHDVNYMALSGVLAQLVDKSGRPVHPKVTFADFIGGMAAAERILAALFARERT
CCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
GKGAHLDVSLVDGLTAMMAGHFAIEHGGGPKNGLMELAGEVVCYQLYETKDGRYMSLAAL
CCCCEEEHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHEEEEEEECCCCCEEEEEEC
EPHFWRQFCEAVGRPEWTEAQWAPARPGEAVYDGLVALFREKTFSEWSAFAETVDACLAP
CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLETDEAKQLFADDRLRHLVRLQPDGVWAAAHGPDGQWGGGVSPQVNEHAYLLVGEE
HHCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MLNGVVVLDFSHYLPGPFASWRLAQLGAEVIKIEPPSGDRLRPFAGGKLFASYNTGKKSV
CCCCEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEE
ALDLKTDGGREQARRLAARADVLIESFRPGVMARLGLGYNDICCINERIIYCSISGFGQQ
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCEEEEEEECCCCCC
SDRSLLGSHDVNYMALSGVLAQLVDKSGRPVHPKVTFADFIGGMAAAERILAALFARERT
CCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
GKGAHLDVSLVDGLTAMMAGHFAIEHGGGPKNGLMELAGEVVCYQLYETKDGRYMSLAAL
CCCCEEEHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHEEEEEEECCCCCEEEEEEC
EPHFWRQFCEAVGRPEWTEAQWAPARPGEAVYDGLVALFREKTFSEWSAFAETVDACLAP
CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLETDEAKQLFADDRLRHLVRLQPDGVWAAAHGPDGQWGGGVSPQVNEHAYLLVGEE
HHCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]