Click here to switch to the map view.

The map label for this gene is flgC [H]

Identifier: 138894738

GI number: 138894738

Start: 1137109

End: 1137561

Strand: Direct

Name: flgC [H]

Synonym: GTNG_1070

Alternate gene names: 138894738

Gene position: 1137109-1137561 (Clockwise)

Preceding gene: 138894737

Following gene: 138894739

Centisome position: 32.03

GC content: 54.08

Gene sequence:

>453_bases
GTGTCTATGTTTCAAAGCTTAAACATCTCAGCCTCGGCCCTGACTGCTCAACGGTTGCGTATGGACGTGATTTCGTCCAA
CATCGCCAACGTCGATACGACGCGAGCGCGTTTGGTTAATGGGGAGTGGGAGCCGTATCGCCGCAAAGTTGTTGTTGTTG
AACCGCGCGGCGAACAGTTTTCAAGTTATTTGCAGGCTGCTCTCGGCCGTACCGATGCGGTCGGCAGCGGGGTGCGGGTG
CGTGAAATCGTCGACGATCCAGCACCGTTTAAGCTCTTGTACGATCCGGATCATCCGGATGCGGGGGACGATGGCTATGT
TCGTTTGCCCAACGTTGATCCGCTCAAAGAAATGGTTGACTTGATCGGTGCCACGCGTTCCTATGAGGCGAACGTCACTG
CGTTGAACGCCTCAAAAGGGATGTTGATGAAGGCGCTCGAAATAGGAAAATAG

Upstream 100 bases:

>100_bases
AAAATTAGCAGAAAACCAAATTTATTACAATGCGCTCATTGAGCAGTTAAACGGGAAATTCAATACGTTAAAAACAGTGA
TTAAAGGAGGAAAATAGTCC

Downstream 100 bases:

>100_bases
TACGTAAGGAGGATGCATCATGCTTGACGGAGTAAGTCGTGTTGGGCTGACACCGGTGTCCACCGTCCCGAACCCGGTAA
AGCCAGCCGAGGTGCAAAAA

Product: flagellar basal body rod protein FlgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRGEQFSSYLQAALGRTDAVGSGVRV
REIVDDPAPFKLLYDPDHPDAGDDGYVRLPNVDPLKEMVDLIGATRSYEANVTALNASKGMLMKALEIGK

Sequences:

>Translated_150_residues
MSMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRGEQFSSYLQAALGRTDAVGSGVRV
REIVDDPAPFKLLYDPDHPDAGDDGYVRLPNVDPLKEMVDLIGATRSYEANVTALNASKGMLMKALEIGK
>Mature_149_residues
SMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRGEQFSSYLQAALGRTDAVGSGVRVR
EIVDDPAPFKLLYDPDHPDAGDDGYVRLPNVDPLKEMVDLIGATRSYEANVTALNASKGMLMKALEIGK

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787314, Length=150, Percent_Identity=40, Blast_Score=107, Evalue=2e-25,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 16483; Mature: 16352

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRGEQF
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCCCHHH
SSYLQAALGRTDAVGSGVRVREIVDDPAPFKLLYDPDHPDAGDDGYVRLPNVDPLKEMVD
HHHHHHHHCCCCCCCCCCEEEEHHCCCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHH
LIGATRSYEANVTALNASKGMLMKALEIGK
HHCCCCCCCCCEEEEECCCCHHHHHHHCCC
>Mature Secondary Structure 
SMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRGEQF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCCCHHH
SSYLQAALGRTDAVGSGVRVREIVDDPAPFKLLYDPDHPDAGDDGYVRLPNVDPLKEMVD
HHHHHHHHCCCCCCCCCCEEEEHHCCCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHH
LIGATRSYEANVTALNASKGMLMKALEIGK
HHCCCCCCCCCEEEEECCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905667; 9384377 [H]