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The map label for this gene is rnjA [H]

Identifier: 138894587

GI number: 138894587

Start: 990198

End: 991865

Strand: Reverse

Name: rnjA [H]

Synonym: GTNG_0917

Alternate gene names: 138894587

Gene position: 991865-990198 (Counterclockwise)

Preceding gene: 138894588

Following gene: 138894579

Centisome position: 27.94

GC content: 49.7

Gene sequence:

>1668_bases
ATGAAACTATTGACAGACCAACAAGTTGGCGTTTTTGCCCTCGGCGGACTGGGTGAAATCGGGAAAAATACATACGGCGT
ACAATTTCAAGATGAAATCATTGTCATTGACGCGGGCATTAAATTTCCGGAAGACGAACTGCTCGGCATCGACTACGTCA
TCCCGGATTATTCGTATTTAGTGAAACATGCAGAAAAAGTGAAAGGTTTGTTCATTACCCACGGGCATGAAGACCATATT
GGCGGCATTCCGTATTTGCTTCGGCAAGTGAATATCCCTATTTACGGTGGGAAACTGGCGCTTGGGCTCATTCGCAATAA
ACTCGAAGAACACGGATTGCTTCGTCAAGCTAAACTCATTGAAATTCGTGAGGACGATGTCATTCGTTTCCAAAAAACAG
CAGTCACCTTTTTCCGCACGACGCACAGCATTCCAGACAGCTACGGCATCGTCGTCAAAACACCGGTCGGCCAAATCGTC
CATACCGGAGATTTTAAATTTGACTTTACGCCGGTTGGCGAGCCAGCCAATTTGACGAAAATGGCGGAAATCGGGAAAGA
AGGCGTCCTTTGTCTGCTTTCGGACAGCACAAACAGCGAAATTCCGCATTTCACGATGTCAGAACGGCGGGTCGGTGAAA
GCATTCACGACATTTTCCGTAAAGTGGACGGACGAATTATTTTCGCGACGTTTGCCTCTAACATCCACCGACTTCAGCAA
GTGACGGAAGCTGCAGTCGCCAACAATCGGAAAATTGCCGTCTTTGGCCGCAGCATGGAAGCAGCCATTGAAATCGGCCA
AGATCTCGGCTACATTAAATGTCCGAAAGGCACGTTCGTCGATGCAAACGAAATCAATCGACTCCCAGCAAACCAGGTGA
CCATTTTATGCACCGGCAGTCAAGGCGAACCAATGGCGGCCCTATCACGCATCGCCAACGGTACGCACCGGCAAATTCAA
ATCATCCCGGGCGACACGGTTGTCTTTTCTTCGTCGCCGATTCCGGGCAACACGGTGAGCGTCAACCGAACGATCAACAT
GCTATACCGGGCCGGCGCCGAAGTGATCCACGGTCCGCTCAACGATATTCACACGTCGGGACACGGCGGGCAGGAAGAAC
AAAAACTAATGATCCGGTTGATGAAACCGAAATATTTTATGCCAATTCACGGCGAATACCGCATGCAAAAAATGCACGCC
AAGCTTGCCATCGACTGCGGTGTGCCAGAGGAAAACTGCTTTATTATGGATAACGGTGAAGTGCTCGGCATCAGCGACAG
CGAAGCACGCATCGTCGGCAAAATTCCGTCCGGCTCTGTCTACATCGACGGCAGCGGCGTCGGCGATATCGGCAACATTG
TCTTGCGCGACCGTCGCATTTTGTCGGAGGAAGGGCTCGTGATCGTTGTTGTCAGCATCAATATGAAAGAATTTAAAATC
GCGGCCGGTCCTGATATTATCTCCCGCGGCTTCGTCTACATGCGCGAGTCAGGTGATTTGATCAGCGAGGCACAGGCGCT
CATCACCAAACATCTCGAAAAAGTGCTCGAGCGAAAAACGAATCAATGGTCGGAAATTAAAAATGAAATTACGGAAACGC
TCGCTCCGTTCTTATATGAACGAACGAAGCGGCGGCCGATGATTTTGCCGATCATCATGGAGATTTAA

Upstream 100 bases:

>100_bases
AGGATCGTTCGATCAATATCGAGTATATTCAGCCGTTAGAGGGAGCGCATTTGGAGTACGAAAAGCAAAGCCCTAACTTT
CAAGTATTGGAGATTTCATC

Downstream 100 bases:

>100_bases
CCAAAAAGGGGTGTCCTTTTCGCAAGGACACCCTTTTCTATATAACATGACCAGCCTCTAGAGGAGTGATCACCTAACGG
GGACGCGGCGCAAACATGTC

Product: Zn-dependent hydrolase

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYLVKHAEKVKGLFITHGHEDHI
GGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLIEIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANQVTILCTGSQGEPMAALSRIANGTHRQIQ
IIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHA
KLAIDCGVPEENCFIMDNGEVLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQALITKHLEKVLERKTNQWSEIKNEITETLAPFLYERTKRRPMILPIIMEI

Sequences:

>Translated_555_residues
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYLVKHAEKVKGLFITHGHEDHI
GGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLIEIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANQVTILCTGSQGEPMAALSRIANGTHRQIQ
IIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHA
KLAIDCGVPEENCFIMDNGEVLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQALITKHLEKVLERKTNQWSEIKNEITETLAPFLYERTKRRPMILPIIMEI
>Mature_555_residues
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYLVKHAEKVKGLFITHGHEDHI
GGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLIEIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANQVTILCTGSQGEPMAALSRIANGTHRQIQ
IIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHA
KLAIDCGVPEENCFIMDNGEVLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQALITKHLEKVLERKTNQWSEIKNEITETLAPFLYERTKRRPMILPIIMEI

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61537; Mature: 61537

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
CCCCCCCCCCEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCHHEEEEEEECCCHHHH
VKHAEKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
HHHHHHHCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCHHHEEEE
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
EECCCCEEEEEHHHEEEEHHHCCCCCCCCEEEECCCCCEEECCCCEEEEECCCCCCCHHH
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
HHHCCCCCEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHH
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANQVTILCTGS
HHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEECCCCCEECHHHHCCCCCCCEEEEEECC
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
CCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCEEEEHHHHHHHHHCCHHHEECCH
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
HHHCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHEEEEEEECCCCCCCEEEEECCC
VLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
EEEECCCCCEEEEECCCCCEEECCCCCCCCCHHEEECCHHHCCCCEEEEEEEECCEEEEE
AAGPDIISRGFVYMRESGDLISEAQALITKHLEKVLERKTNQWSEIKNEITETLAPFLYE
ECCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RTKRRPMILPIIMEI
HHCCCCEEEEEEEEC
>Mature Secondary Structure
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
CCCCCCCCCCEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCHHEEEEEEECCCHHHH
VKHAEKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
HHHHHHHCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCHHHEEEE
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
EECCCCEEEEEHHHEEEEHHHCCCCCCCCEEEECCCCCEEECCCCEEEEECCCCCCCHHH
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
HHHCCCCCEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHH
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANQVTILCTGS
HHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEECCCCCEECHHHHCCCCCCCEEEEEECC
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
CCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCEEEEHHHHHHHHHCCHHHEECCH
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
HHHCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHEEEEEEECCCCCCCEEEEECCC
VLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
EEEECCCCCEEEEECCCCCEEECCCCCCCCCHHEEECCHHHCCCCEEEEEEEECCEEEEE
AAGPDIISRGFVYMRESGDLISEAQALITKHLEKVLERKTNQWSEIKNEITETLAPFLYE
ECCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RTKRRPMILPIIMEI
HHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]