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The map label for this gene is rbsB [H]

Identifier: 138894506

GI number: 138894506

Start: 910482

End: 911630

Strand: Reverse

Name: rbsB [H]

Synonym: GTNG_0836

Alternate gene names: 138894506

Gene position: 911630-910482 (Counterclockwise)

Preceding gene: 138894507

Following gene: 138894505

Centisome position: 25.68

GC content: 48.91

Gene sequence:

>1149_bases
ATGAAACAGCTTAAAATCTCATCGTTCCTTCTTTTCTTGGCCATGTTCTTTGTCTTAGCGGGCTGCACAAATGAGCAAGA
CGCAATGAGCGCAAAGCCGGCCAATGAAACGAAGACAACGAATAATGAAACAACCGTTGACAAAACAGCAGCCACAAGCA
GTGAAGAGGCCGCCATCCCAGAAAAACTGAAACAGCCAGTGAAAATCGCCGCCATTATGCAGATGTCGATCGGGACGTTC
TCATCACAATACATCGCCGGCGTGAAAGAACAAGTGCAAAAGTTTGGCGGTGAAGTGCAAATTTATAATGCCGATAACGA
TTTAACGAAGATGGCCTCTTATGTCGAGACGGCCATTACGCAAAACGTCGATGCTATTTTGCTTGACCACGGCCGCGCCG
ACGCGCTCGAAGGTCCCGTGAAAAAAGCAGTTGAAAAAGGCATCCCGGTCGTAGCATTTGACAATGATTTGAACATTCCG
GGCGTCACCGTCATCGACCAAGACGACTATAGCCTCGCTTGGAAGACGTTAAAAACACTTGCGGAAGACTTAAACGGCGA
AGGCAAAATCGTCACGATTTGGGTCGGCGGTTTTACGCCAATGGAGCGGCGCCATGTCATTTACGACGCATTTAAAAAAC
GCTACCCAAACATTAAAGAAGTCGCCAAGTTCGGCACAGCGAGCGCTAACACCGCCTTAGACACACAAACACAAATGGAG
GCCATTTTGAAAAAATATCCGAATAAGGGCGACATCGACGCCGTTTTCGCCACATGGGACGAGTTCGCCAAAGGAGCAAC
GCGCGCCATCGAACAAGCCGGGCGCACGGAAATTAAAGTGTACAGCATTGATCTAAGCGATGAAGACTTGCAAATGATTC
AAAAATCGAACAGCCCGTGGGTGGCGACGACCGCTACCGATCCAGCCGAAGTCGGTCGCGTTCAAGTCCGCTTCGCCTAT
CAAAAAATCGCTGGTGAAAAAACGCCGAACATTTACTCACTTGAACCGCACTTAGTGAAACGAGCCGATCTGCCGGACAA
ACAAATATCAATGGGCGAGCTCTCGCAATACATCCCAAGCTGGGGACAATCGAATATCGCCATCTCGCCGTGGATGAAAA
CATTAGAAGCTCAGGTGAGCCAAAAATGA

Upstream 100 bases:

>100_bases
ACACCAAACGAACTCATTACCGCCATCATTACCGAAAAAGGCATCGTCTACGGAGACTATGAAACGGAGCTGCCATCGTT
AGTTGCAAAGGAGGAGCACC

Downstream 100 bases:

>100_bases
GCGGCTTGTCAATGAAGGCCATTGAAAAAGCGTTTGGCACGGTGCGCGTGCTTAACGGCGTGAACTTTGACGTCCGTCCG
GGCGAAGTTCACGCCCTTTT

Product: methylthioribose-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKQLKISSFLLFLAMFFVLAGCTNEQDAMSAKPANETKTTNNETTVDKTAATSSEEAAIPEKLKQPVKIAAIMQMSIGTF
SSQYIAGVKEQVQKFGGEVQIYNADNDLTKMASYVETAITQNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIP
GVTVIDQDDYSLAWKTLKTLAEDLNGEGKIVTIWVGGFTPMERRHVIYDAFKKRYPNIKEVAKFGTASANTALDTQTQME
AILKKYPNKGDIDAVFATWDEFAKGATRAIEQAGRTEIKVYSIDLSDEDLQMIQKSNSPWVATTATDPAEVGRVQVRFAY
QKIAGEKTPNIYSLEPHLVKRADLPDKQISMGELSQYIPSWGQSNIAISPWMKTLEAQVSQK

Sequences:

>Translated_382_residues
MKQLKISSFLLFLAMFFVLAGCTNEQDAMSAKPANETKTTNNETTVDKTAATSSEEAAIPEKLKQPVKIAAIMQMSIGTF
SSQYIAGVKEQVQKFGGEVQIYNADNDLTKMASYVETAITQNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIP
GVTVIDQDDYSLAWKTLKTLAEDLNGEGKIVTIWVGGFTPMERRHVIYDAFKKRYPNIKEVAKFGTASANTALDTQTQME
AILKKYPNKGDIDAVFATWDEFAKGATRAIEQAGRTEIKVYSIDLSDEDLQMIQKSNSPWVATTATDPAEVGRVQVRFAY
QKIAGEKTPNIYSLEPHLVKRADLPDKQISMGELSQYIPSWGQSNIAISPWMKTLEAQVSQK
>Mature_382_residues
MKQLKISSFLLFLAMFFVLAGCTNEQDAMSAKPANETKTTNNETTVDKTAATSSEEAAIPEKLKQPVKIAAIMQMSIGTF
SSQYIAGVKEQVQKFGGEVQIYNADNDLTKMASYVETAITQNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIP
GVTVIDQDDYSLAWKTLKTLAEDLNGEGKIVTIWVGGFTPMERRHVIYDAFKKRYPNIKEVAKFGTASANTALDTQTQME
AILKKYPNKGDIDAVFATWDEFAKGATRAIEQAGRTEIKVYSIDLSDEDLQMIQKSNSPWVATTATDPAEVGRVQVRFAY
QKIAGEKTPNIYSLEPHLVKRADLPDKQISMGELSQYIPSWGQSNIAISPWMKTLEAQVSQK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788898, Length=255, Percent_Identity=27.843137254902, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 42118; Mature: 42118

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLKISSFLLFLAMFFVLAGCTNEQDAMSAKPANETKTTNNETTVDKTAATSSEEAAIP
CCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCCH
EKLKQPVKIAAIMQMSIGTFSSQYIAGVKEQVQKFGGEVQIYNADNDLTKMASYVETAIT
HHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHH
QNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIPGVTVIDQDDYSLAWKTLKTL
CCCCEEEEECCCCCHHCHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHH
AEDLNGEGKIVTIWVGGFTPMERRHVIYDAFKKRYPNIKEVAKFGTASANTALDTQTQME
HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHH
AILKKYPNKGDIDAVFATWDEFAKGATRAIEQAGRTEIKVYSIDLSDEDLQMIQKSNSPW
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCE
VATTATDPAEVGRVQVRFAYQKIAGEKTPNIYSLEPHLVKRADLPDKQISMGELSQYIPS
EEECCCCHHHHCEEEEEEHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCHHHHHHHCCC
WGQSNIAISPWMKTLEAQVSQK
CCCCCEEEHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQLKISSFLLFLAMFFVLAGCTNEQDAMSAKPANETKTTNNETTVDKTAATSSEEAAIP
CCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCCH
EKLKQPVKIAAIMQMSIGTFSSQYIAGVKEQVQKFGGEVQIYNADNDLTKMASYVETAIT
HHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHH
QNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIPGVTVIDQDDYSLAWKTLKTL
CCCCEEEEECCCCCHHCHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHH
AEDLNGEGKIVTIWVGGFTPMERRHVIYDAFKKRYPNIKEVAKFGTASANTALDTQTQME
HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHH
AILKKYPNKGDIDAVFATWDEFAKGATRAIEQAGRTEIKVYSIDLSDEDLQMIQKSNSPW
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCE
VATTATDPAEVGRVQVRFAYQKIAGEKTPNIYSLEPHLVKRADLPDKQISMGELSQYIPS
EEECCCCHHHHCEEEEEEHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCHHHHHHHCCC
WGQSNIAISPWMKTLEAQVSQK
CCCCCEEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]