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The map label for this gene is rbsC [H]

Identifier: 138894504

GI number: 138894504

Start: 907980

End: 908993

Strand: Reverse

Name: rbsC [H]

Synonym: GTNG_0834

Alternate gene names: 138894504

Gene position: 908993-907980 (Counterclockwise)

Preceding gene: 138894505

Following gene: 138894501

Centisome position: 25.6

GC content: 50.99

Gene sequence:

>1014_bases
ATGGCCCAGCCGGCCGTTTCCGCGACACCGTCGAAAAAAGCGGTGTTGTCTACTCTTGAGTTTTTGTATAAACATGGCAC
ACTGTTGGCCATTTTAGCCGTGATCGCCTATTTTGGCATCACACAAGACCAGTTTTTTACGTATGAAAACTTCAGCGACA
TTTTGCGCTCGATTTCGATCGTGACACTCGTAGCGATCGGCATTACCTTTTCGCTGATCGTTGACGGCTTCGATTTATCG
GTCGGCTCGACGGTAAGTCTCGCGACCATCGCCAGTGCAGCGGCGCTCGTTTTGTACCGCCAAGAAATTTTCGTCACGCT
GCTCGTTCCGCTTTTACTCGGAATCGCCGTCGGGCTGCTTAATTCGCTATTGATCGTCAAGTTCAAATTGCCTGATTTGC
TCGCGACCTTAGCAACCATGTACGCCATTAACGGCGTGCAGCTCACCTATACGAAAGGATTTTCCATTTACAACGACATG
CCGCTGCCAGACGGCGGTACGGCGCCGGGCAAATTCATTCCTTCCTTTTTATTTATCGGCCAAGGAGAGTTGTTCGGCAT
CCCGTTTTCCGTTTTGCTGATGCTGTTCGTTGTCATTGCCGCCCATTTGTTTTTGACATACACAAAACCGGGACGCCTCT
TTTATTTGACCGGGGAAAACCGAGAAGCGGCAAGGCTGTCAGGCATTCCAGTGAACCGTTACCGGACGTATGCGTACGTC
ATTAGCGGCTTTTTCGCTGCTTTAGGGGGCATTGTGCTTGCCTCGCGTATCGGCACTGGTCAAGTATCAGCCGGTGCTTC
GTTTTTGATGGATGGCGTCGCCGCCGCCTACATCGGCTTTTCCGTCTTTGGCGCCGGCAAGCCGAATGTCATCGGCACGT
TGTTCGGCTCAATTTTGATGGGGGTATTGTTAAACGGCTTGACGATGATGAACGTCCCGTACTACGCTCAAGACATTATT
AAAGGCGCCATTTTAGTCGGCGCCCTCGCTCTGTCACATTGGCAAAAAAAATAG

Upstream 100 bases:

>100_bases
ACGATTTATATCATGGTAGACGGCCGGCTGCTCGCCCGTCTGCCGGCCGCTGAATTAACCTATGAGCAGCTTGTTTATTA
TTGCAGCGGAGGTGAGATCG

Downstream 100 bases:

>100_bases
CCCCCGATCCCGCCCCTGTAGGTTCAAGTCCCGGGGGCGGCATTTTTTATTTTCCATGCTTCATCCCCGGCCCTTCCGCC
CTATTTACAGCGCCGCTCCA

Product: methylthioribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MAQPAVSATPSKKAVLSTLEFLYKHGTLLAILAVIAYFGITQDQFFTYENFSDILRSISIVTLVAIGITFSLIVDGFDLS
VGSTVSLATIASAAALVLYRQEIFVTLLVPLLLGIAVGLLNSLLIVKFKLPDLLATLATMYAINGVQLTYTKGFSIYNDM
PLPDGGTAPGKFIPSFLFIGQGELFGIPFSVLLMLFVVIAAHLFLTYTKPGRLFYLTGENREAARLSGIPVNRYRTYAYV
ISGFFAALGGIVLASRIGTGQVSAGASFLMDGVAAAYIGFSVFGAGKPNVIGTLFGSILMGVLLNGLTMMNVPYYAQDII
KGAILVGALALSHWQKK

Sequences:

>Translated_337_residues
MAQPAVSATPSKKAVLSTLEFLYKHGTLLAILAVIAYFGITQDQFFTYENFSDILRSISIVTLVAIGITFSLIVDGFDLS
VGSTVSLATIASAAALVLYRQEIFVTLLVPLLLGIAVGLLNSLLIVKFKLPDLLATLATMYAINGVQLTYTKGFSIYNDM
PLPDGGTAPGKFIPSFLFIGQGELFGIPFSVLLMLFVVIAAHLFLTYTKPGRLFYLTGENREAARLSGIPVNRYRTYAYV
ISGFFAALGGIVLASRIGTGQVSAGASFLMDGVAAAYIGFSVFGAGKPNVIGTLFGSILMGVLLNGLTMMNVPYYAQDII
KGAILVGALALSHWQKK
>Mature_336_residues
AQPAVSATPSKKAVLSTLEFLYKHGTLLAILAVIAYFGITQDQFFTYENFSDILRSISIVTLVAIGITFSLIVDGFDLSV
GSTVSLATIASAAALVLYRQEIFVTLLVPLLLGIAVGLLNSLLIVKFKLPDLLATLATMYAINGVQLTYTKGFSIYNDMP
LPDGGTAPGKFIPSFLFIGQGELFGIPFSVLLMLFVVIAAHLFLTYTKPGRLFYLTGENREAARLSGIPVNRYRTYAYVI
SGFFAALGGIVLASRIGTGQVSAGASFLMDGVAAAYIGFSVFGAGKPNVIGTLFGSILMGVLLNGLTMMNVPYYAQDIIK
GAILVGALALSHWQKK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=319, Percent_Identity=32.9153605015674, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693152, Length=337, Percent_Identity=29.673590504451, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1790524, Length=333, Percent_Identity=27.6276276276276, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=29.8136645962733, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=41.6666666666667, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787794, Length=268, Percent_Identity=30.9701492537313, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787793, Length=291, Percent_Identity=28.5223367697594, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788471, Length=335, Percent_Identity=30.1492537313433, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082395, Length=259, Percent_Identity=29.3436293436293, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693214, Length=261, Percent_Identity=29.8850574712644, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35915; Mature: 35784

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPAVSATPSKKAVLSTLEFLYKHGTLLAILAVIAYFGITQDQFFTYENFSDILRSISI
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHEECCCHHHHHHHHHH
VTLVAIGITFSLIVDGFDLSVGSTVSLATIASAAALVLYRQEIFVTLLVPLLLGIAVGLL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLLIVKFKLPDLLATLATMYAINGVQLTYTKGFSIYNDMPLPDGGTAPGKFIPSFLFIG
HHHHEEEECCHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHEEC
QGELFGIPFSVLLMLFVVIAAHLFLTYTKPGRLFYLTGENREAARLSGIPVNRYRTYAYV
CCCEECCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHH
ISGFFAALGGIVLASRIGTGQVSAGASFLMDGVAAAYIGFSVFGAGKPNVIGTLFGSILM
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GVLLNGLTMMNVPYYAQDIIKGAILVGALALSHWQKK
HHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQPAVSATPSKKAVLSTLEFLYKHGTLLAILAVIAYFGITQDQFFTYENFSDILRSISI
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHEECCCHHHHHHHHHH
VTLVAIGITFSLIVDGFDLSVGSTVSLATIASAAALVLYRQEIFVTLLVPLLLGIAVGLL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLLIVKFKLPDLLATLATMYAINGVQLTYTKGFSIYNDMPLPDGGTAPGKFIPSFLFIG
HHHHEEEECCHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHEEC
QGELFGIPFSVLLMLFVVIAAHLFLTYTKPGRLFYLTGENREAARLSGIPVNRYRTYAYV
CCCEECCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHH
ISGFFAALGGIVLASRIGTGQVSAGASFLMDGVAAAYIGFSVFGAGKPNVIGTLFGSILM
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GVLLNGLTMMNVPYYAQDIIKGAILVGALALSHWQKK
HHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]