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The map label for this gene is araQ [H]

Identifier: 138894496

GI number: 138894496

Start: 901107

End: 901934

Strand: Direct

Name: araQ [H]

Synonym: GTNG_0826

Alternate gene names: 138894496

Gene position: 901107-901934 (Clockwise)

Preceding gene: 138894495

Following gene: 138894497

Centisome position: 25.38

GC content: 44.2

Gene sequence:

>828_bases
ATGAAAAGAAAAATAGGAATTGGGAAAGCGCTGCTGTATGTTGTACTTGTTATGTATGCGATCATTACGCTGATTCCGTT
TTTATGGGCGCTGTCTTCCTCGTTTAAGACGCTTGAGGAAATTGTCAGTGGAACCATGTCGTTTGTTCCAAAACAGTTCA
CGCTGGATAATTACAAGCAAATTTTTGTTGAGCAGGATCTATTCCCACGTTGGTTGTTAAACAGTGTCATCATCGCCGTG
GCAGTGACCATACTCAATTTATTGTTTAATTCCATGGCTGGCTATGCCTTAGCGCGGCTGCAGTTTCCTGGGAGAAAACC
GCTGTTTTTGATCATTTTAGCTGTCTTAATGATTCCCGCCCAAGTGACGATGATTCCAAACTATTTGATTTTAAAACAGC
TCGGCTGGTTAAACTCGTATCAAGGAATGATCGTGCCGACGATGATTAACGCTACTTTTATTTTCATGATGCGGCAGTTT
TTTATCAATTTCCCGAAGGAATTGGAAGAGGCAGCGGAGCTTGATGGGCTTGGCCGGTTCGGGATCTTTTTCCGGATCGT
GCTGCCGCTTGCTCGCCCGGCACTGGCGGCTCAGGCTATTTTCGTCTTTATGGGCTCGTGGAATGATTTTATGCGTCCGC
TTATTATTTTGTCCGATCCGCAATTGTTTACATTGCCGCTTGGCCTGAACAGCTTCAAAGGACAATACATCAGCTATTGG
AACTACATCATGGCTGCCTCGATGGTATTTACGTTGCCGGTGTTGGTCATTTATGCGTTTTTCAATCGGTATTTCATCAA
AGGAATTTCGTTTACGGGCGGGAAATAA

Upstream 100 bases:

>100_bases
CTGCGTTGGCATTTGCGTTGGCCATCATTATTTTAATCGCGACATTAATCCAGCGGAAGCTATCGAAAGAGGAGTCCCTT
TATTAAGGAGTTGAGGACGA

Downstream 100 bases:

>100_bases
GAATGGTTTTGCTTCCGTGCGCACATTGAAGAAAGAAGGGTTCGCGTATAGGGCTGTCGGCAAAGGTTTCCTTGGCCTTT
GCCGACAGCTTTTTTTCATG

Product: sugar transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKRKIGIGKALLYVVLVMYAIITLIPFLWALSSSFKTLEEIVSGTMSFVPKQFTLDNYKQIFVEQDLFPRWLLNSVIIAV
AVTILNLLFNSMAGYALARLQFPGRKPLFLIILAVLMIPAQVTMIPNYLILKQLGWLNSYQGMIVPTMINATFIFMMRQF
FINFPKELEEAAELDGLGRFGIFFRIVLPLARPALAAQAIFVFMGSWNDFMRPLIILSDPQLFTLPLGLNSFKGQYISYW
NYIMAASMVFTLPVLVIYAFFNRYFIKGISFTGGK

Sequences:

>Translated_275_residues
MKRKIGIGKALLYVVLVMYAIITLIPFLWALSSSFKTLEEIVSGTMSFVPKQFTLDNYKQIFVEQDLFPRWLLNSVIIAV
AVTILNLLFNSMAGYALARLQFPGRKPLFLIILAVLMIPAQVTMIPNYLILKQLGWLNSYQGMIVPTMINATFIFMMRQF
FINFPKELEEAAELDGLGRFGIFFRIVLPLARPALAAQAIFVFMGSWNDFMRPLIILSDPQLFTLPLGLNSFKGQYISYW
NYIMAASMVFTLPVLVIYAFFNRYFIKGISFTGGK
>Mature_275_residues
MKRKIGIGKALLYVVLVMYAIITLIPFLWALSSSFKTLEEIVSGTMSFVPKQFTLDNYKQIFVEQDLFPRWLLNSVIIAV
AVTILNLLFNSMAGYALARLQFPGRKPLFLIILAVLMIPAQVTMIPNYLILKQLGWLNSYQGMIVPTMINATFIFMMRQF
FINFPKELEEAAELDGLGRFGIFFRIVLPLARPALAAQAIFVFMGSWNDFMRPLIILSDPQLFTLPLGLNSFKGQYISYW
NYIMAASMVFTLPVLVIYAFFNRYFIKGISFTGGK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=268, Percent_Identity=35.4477611940299, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789860, Length=264, Percent_Identity=30.3030303030303, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1790464, Length=251, Percent_Identity=27.8884462151394, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31373; Mature: 31373

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKIGIGKALLYVVLVMYAIITLIPFLWALSSSFKTLEEIVSGTMSFVPKQFTLDNYKQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IFVEQDLFPRWLLNSVIIAVAVTILNLLFNSMAGYALARLQFPGRKPLFLIILAVLMIPA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QVTMIPNYLILKQLGWLNSYQGMIVPTMINATFIFMMRQFFINFPKELEEAAELDGLGRF
HHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
GIFFRIVLPLARPALAAQAIFVFMGSWNDFMRPLIILSDPQLFTLPLGLNSFKGQYISYW
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCEEEEECCCCHHCCHHHHHH
NYIMAASMVFTLPVLVIYAFFNRYFIKGISFTGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRKIGIGKALLYVVLVMYAIITLIPFLWALSSSFKTLEEIVSGTMSFVPKQFTLDNYKQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IFVEQDLFPRWLLNSVIIAVAVTILNLLFNSMAGYALARLQFPGRKPLFLIILAVLMIPA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QVTMIPNYLILKQLGWLNSYQGMIVPTMINATFIFMMRQFFINFPKELEEAAELDGLGRF
HHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
GIFFRIVLPLARPALAAQAIFVFMGSWNDFMRPLIILSDPQLFTLPLGLNSFKGQYISYW
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCEEEEECCCCHHCCHHHHHH
NYIMAASMVFTLPVLVIYAFFNRYFIKGISFTGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]