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The map label for this gene is yhaM [H]

Identifier: 138894231

GI number: 138894231

Start: 618958

End: 619938

Strand: Direct

Name: yhaM [H]

Synonym: GTNG_0557

Alternate gene names: 138894231

Gene position: 618958-619938 (Clockwise)

Preceding gene: 138894230

Following gene: 138894232

Centisome position: 17.43

GC content: 47.6

Gene sequence:

>981_bases
GTGGCGAAAGGCATTATTCATTATGAAGTCGGGGAACAAGTCGATTTGTTTTTGCTCATTAAATCAGCAACCAAAGGCAT
TGCCAGCAACGGCAAGCCGTTTTTAACATTAATTTTACAAGATAAAAGCGGCGACATTGAAGCAAAGCTGTGGGATGTGT
CTCCTGACGATGAGGAACGGTACGCGCCGGAATGCATTGTCAAAGTGGTCGGTGATATTCATAATTACCGCGGCAAACTG
CAGCTTCGCATCCGCTCGATCCGCCCCGCCCATCCGAGCGAAGCGGTGCGTGTTGATGATTTTTTAGAGACTGCTCCGCT
TACTCGTGAGGAAATGAAGGCGAAAGTGATGGATTACATATTTTCCATGGAAAATCCAAATATTCAGCGCATTACGCGTT
ATTTGCTAAAAAAATATGAAACGCCGTTTTTTGAGTATCCGGCAGCGACGAAAAACCATCATGAATTTATTTCCGGACTG
GCGTATCACGTCGTCTCTATGCTCGAACTCGCTGAGGCGCTCGTTCGCTTGTATCCGTCGCTCAATAAAGACTTGCTTTA
TGCCGGCATTATTTTGCATGACCTTGGCAAAGTGATCGAACTGTCCGGCCCAGTATCGGCGGTGTATACGCTTGAAGGCA
ATTTGCTCGGTCATATTTCAATCATGGGTCAGGCGAAATTAGCAAGGGCGGCTGAACAGCTCGGCATTCAAGGCGAAGAG
GTCGTCATTTTGCAACATCTCGTGTTGTCGCACCACGGAAAAGCGGAGTGGGGCAGCCCGAAGCCGCCGCTTGTCAAAGA
GGCGGAAGTGCTTCATTATATTGATAATTTAGATGCGAAGATGAATATGATCGACCGTGCACTGGAAAAAGTGAAGCCAG
GCGAGTTTACCGAGCGCATTTTTGCCCTTGACAACCGTTCATTTTACAAGCCGGCGTTTTTGGCTGTTTCAGCGCCAAAG
ACAGCGGGTAATGAGAAATAG

Upstream 100 bases:

>100_bases
GGAGCCCGGTTTCCTTGCCTAGTCGGCAAGGCTTTCTTTTTGCGGTTCGACCGTTATGATATACTAAAGGGTACGTAAAG
AGAAACGGAGGAGAACAAAC

Downstream 100 bases:

>100_bases
CTACAGGGATAGGAGGGATGAGACGGGATCGAACCGATCATGGGAAATCATCCCAATTCTCCAACATAGTTGAAAGAAGG
CTCGAACGAGCGGCGATGAC

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAKGIIHYEVGEQVDLFLLIKSATKGIASNGKPFLTLILQDKSGDIEAKLWDVSPDDEERYAPECIVKVVGDIHNYRGKL
QLRIRSIRPAHPSEAVRVDDFLETAPLTREEMKAKVMDYIFSMENPNIQRITRYLLKKYETPFFEYPAATKNHHEFISGL
AYHVVSMLELAEALVRLYPSLNKDLLYAGIILHDLGKVIELSGPVSAVYTLEGNLLGHISIMGQAKLARAAEQLGIQGEE
VVILQHLVLSHHGKAEWGSPKPPLVKEAEVLHYIDNLDAKMNMIDRALEKVKPGEFTERIFALDNRSFYKPAFLAVSAPK
TAGNEK

Sequences:

>Translated_326_residues
MAKGIIHYEVGEQVDLFLLIKSATKGIASNGKPFLTLILQDKSGDIEAKLWDVSPDDEERYAPECIVKVVGDIHNYRGKL
QLRIRSIRPAHPSEAVRVDDFLETAPLTREEMKAKVMDYIFSMENPNIQRITRYLLKKYETPFFEYPAATKNHHEFISGL
AYHVVSMLELAEALVRLYPSLNKDLLYAGIILHDLGKVIELSGPVSAVYTLEGNLLGHISIMGQAKLARAAEQLGIQGEE
VVILQHLVLSHHGKAEWGSPKPPLVKEAEVLHYIDNLDAKMNMIDRALEKVKPGEFTERIFALDNRSFYKPAFLAVSAPK
TAGNEK
>Mature_325_residues
AKGIIHYEVGEQVDLFLLIKSATKGIASNGKPFLTLILQDKSGDIEAKLWDVSPDDEERYAPECIVKVVGDIHNYRGKLQ
LRIRSIRPAHPSEAVRVDDFLETAPLTREEMKAKVMDYIFSMENPNIQRITRYLLKKYETPFFEYPAATKNHHEFISGLA
YHVVSMLELAEALVRLYPSLNKDLLYAGIILHDLGKVIELSGPVSAVYTLEGNLLGHISIMGQAKLARAAEQLGIQGEEV
VILQHLVLSHHGKAEWGSPKPPLVKEAEVLHYIDNLDAKMNMIDRALEKVKPGEFTERIFALDNRSFYKPAFLAVSAPKT
AGNEK

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 36599; Mature: 36468

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGIIHYEVGEQVDLFLLIKSATKGIASNGKPFLTLILQDKSGDIEAKLWDVSPDDEER
CCCCEEEEECCCCEEEEEEEEHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHH
YAPECIVKVVGDIHNYRGKLQLRIRSIRPAHPSEAVRVDDFLETAPLTREEMKAKVMDYI
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHH
FSMENPNIQRITRYLLKKYETPFFEYPAATKNHHEFISGLAYHVVSMLELAEALVRLYPS
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LNKDLLYAGIILHDLGKVIELSGPVSAVYTLEGNLLGHISIMGQAKLARAAEQLGIQGEE
CCHHHHHHHHHHHHHHHHEECCCCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHCCCCCH
VVILQHLVLSHHGKAEWGSPKPPLVKEAEVLHYIDNLDAKMNMIDRALEKVKPGEFTERI
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
FALDNRSFYKPAFLAVSAPKTAGNEK
HHCCCCCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
AKGIIHYEVGEQVDLFLLIKSATKGIASNGKPFLTLILQDKSGDIEAKLWDVSPDDEER
CCCEEEEECCCCEEEEEEEEHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHH
YAPECIVKVVGDIHNYRGKLQLRIRSIRPAHPSEAVRVDDFLETAPLTREEMKAKVMDYI
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHH
FSMENPNIQRITRYLLKKYETPFFEYPAATKNHHEFISGLAYHVVSMLELAEALVRLYPS
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LNKDLLYAGIILHDLGKVIELSGPVSAVYTLEGNLLGHISIMGQAKLARAAEQLGIQGEE
CCHHHHHHHHHHHHHHHHEECCCCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHCCCCCH
VVILQHLVLSHHGKAEWGSPKPPLVKEAEVLHYIDNLDAKMNMIDRALEKVKPGEFTERI
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
FALDNRSFYKPAFLAVSAPKTAGNEK
HHCCCCCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA