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The map label for this gene is yabJ [H]

Identifier: 138893720

GI number: 138893720

Start: 52092

End: 52466

Strand: Direct

Name: yabJ [H]

Synonym: GTNG_0041

Alternate gene names: 138893720

Gene position: 52092-52466 (Clockwise)

Preceding gene: 138893719

Following gene: 138893721

Centisome position: 1.47

GC content: 43.73

Gene sequence:

>375_bases
ATGAGAAAAGTGGAAACAAAAAATGCGCCACAAGCCATTGGTCCTTATTCACAAGGAATTATTGTCAATAACATGTTTTA
CAGCTCAGGGCAAATTCCGCTCACTCCGGAAGGGGAATTGGTAAAAGGTGACATTCAAGCGCAGACGCATCAAGTGTTCC
AGAATTTAAAAGCGGTATTGGAAGCAGCTGGCGCTTCGCTCGAAACGGTCGTAAAAACAACGGTATTTATAAAAAATATG
GATGATTTTGCGGCCATGAATGAAGTATACAGCCAATACTTCCCAAACCATAAACCGGCGCGCTCATGCGTGGAAGTGGC
TCGATTGCCGAAAGATGTCCTTGTCGAAATTGAAGTCGTTGCTCTTGTACCGTAA

Upstream 100 bases:

>100_bases
GAAAAACGAATCGCGGTCAAGGAAGGAAATTACAAAGCGTTTGTTTAGGTAGCGTGTTGCTTGTTATAATGAGGAAAATT
GAGGAAGGAGGATTTTACTA

Downstream 100 bases:

>100_bases
CAGTCAATCTCCTCCTTTTCCCTACCTGAAGTTTATAAAAAATTTTTTGAAAAAAGAAGGAAATGACTCGAGGACGTGGA
ATTAATTACATCGAGTCTCA

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MRKVETKNAPQAIGPYSQGIIVNNMFYSSGQIPLTPEGELVKGDIQAQTHQVFQNLKAVLEAAGASLETVVKTTVFIKNM
DDFAAMNEVYSQYFPNHKPARSCVEVARLPKDVLVEIEVVALVP

Sequences:

>Translated_124_residues
MRKVETKNAPQAIGPYSQGIIVNNMFYSSGQIPLTPEGELVKGDIQAQTHQVFQNLKAVLEAAGASLETVVKTTVFIKNM
DDFAAMNEVYSQYFPNHKPARSCVEVARLPKDVLVEIEVVALVP
>Mature_124_residues
MRKVETKNAPQAIGPYSQGIIVNNMFYSSGQIPLTPEGELVKGDIQAQTHQVFQNLKAVLEAAGASLETVVKTTVFIKNM
DDFAAMNEVYSQYFPNHKPARSCVEVARLPKDVLVEIEVVALVP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=45.0819672131148, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=51.6129032258064, Blast_Score=137, Evalue=2e-34,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=49.2063492063492, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1787245, Length=110, Percent_Identity=32.7272727272727, Blast_Score=82, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25148896, Length=120, Percent_Identity=53.3333333333333, Blast_Score=122, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71982075, Length=120, Percent_Identity=53.3333333333333, Blast_Score=122, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=120, Percent_Identity=53.3333333333333, Blast_Score=122, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=49.5798319327731, Blast_Score=122, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=52, Blast_Score=112, Evalue=1e-26,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=43.3333333333333, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13634; Mature: 13634

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVETKNAPQAIGPYSQGIIVNNMFYSSGQIPLTPEGELVKGDIQAQTHQVFQNLKAVL
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH
EAAGASLETVVKTTVFIKNMDDFAAMNEVYSQYFPNHKPARSCVEVARLPKDVLVEIEVV
HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHEEEEEEE
ALVP
EECC
>Mature Secondary Structure
MRKVETKNAPQAIGPYSQGIIVNNMFYSSGQIPLTPEGELVKGDIQAQTHQVFQNLKAVL
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH
EAAGASLETVVKTTVFIKNMDDFAAMNEVYSQYFPNHKPARSCVEVARLPKDVLVEIEVV
HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHEEEEEEE
ALVP
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]