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The map label for this gene is rpsF

Identifier: 13507967

GI number: 13507967

Start: 279783

End: 280430

Strand: Direct

Name: rpsF

Synonym: MPN228

Alternate gene names: 13507967

Gene position: 279783-280430 (Clockwise)

Preceding gene: 13507966

Following gene: 13507968

Centisome position: 34.27

GC content: 42.9

Gene sequence:

>648_bases
ATGCAATACAACATTATTCTTTTAGTTGATGGTTCGCTCTCGTTAGAGCAAGCTAACCAAGTGAATGAAAAACAACAGCA
AACGTTAACCAACGTTGAGGGTTTGCAAACAGAATACCTTGGTTTAAAGGAGTTGGCATACCCAATTAAGAAACAACTCT
CAGCGCATTATTACCGCTGGAAGTTTAGTGGTGATAACCAATCCACGAAGGACTTTAAGCGTACCGCTAACATTAACAAG
CAAGTATTACGTGAACTGATTATTAACTTAGAACGTGAGTACGGCTACTTAGCTTCGATAAATCCAAAAAAGCAACAGCT
GGCACTGCAAAAACGCGCTAAGTATGACGAAATCATTGCGCGGGAAAACAACCCCGAAAACCCGGATGTACCAGTAACAT
CAGGTTTAGCTTCCACCCAACCACGCTTATCACGTACTGAAAAGGCACAAAAACCAAAGGAAGAGCTGTGGGATGTGGTG
CAAAAGATGGGAAACTTTGACAGCGTTCAAGCCAACCCATACCGCCCACGTTTCAAACGCTTTAACGCGGAACACGTTAA
CCAACGGCAAAACCAACAAAACAATAACAATAACCGTTTTGACCGCAACCGCAACCGTCAGCACAACCGCTTTAAGGATA
AGCAATAA

Upstream 100 bases:

>100_bases
CCCCTAAGAGTGTGGTGAATGAGATAATTGCCACCAAGAAATAGCAAAATAGATAGGCATAAATCTTTACTTTTATATTT
AGTTTTCCCATAAAGTTACG

Downstream 100 bases:

>100_bases
TGAACCGCGTTTTTTTATTTGGTAAGCTCTCGTTTGATCCTAATAAATTGCAAACCCGTACCAACAATATTGGCGCGTCC
TTTTCCTTAGCGTGCATTGA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRWKFSGDNQSTKDFKRTANINK
QVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIARENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVV
QKMGNFDSVQANPYRPRFKRFNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ

Sequences:

>Translated_215_residues
MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRWKFSGDNQSTKDFKRTANINK
QVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIARENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVV
QKMGNFDSVQANPYRPRFKRFNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ
>Mature_215_residues
MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRWKFSGDNQSTKDFKRTANINK
QVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIARENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVV
QKMGNFDSVQANPYRPRFKRFNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_MYCPN (P75543)

Other databases:

- EMBL:   U00089
- PIR:   S73929
- RefSeq:   NP_109916.1
- ProteinModelPortal:   P75543
- SMR:   P75543
- GeneID:   876983
- GenomeReviews:   U00089_GR
- KEGG:   mpn:MPN228
- HOGENOM:   HBG130017
- OMA:   SAHYYRW
- ProtClustDB:   PRK00453
- BioCyc:   MPNE272634:MPN228-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020815
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 25392; Mature: 25392

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRW
CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
KFSGDNQSTKDFKRTANINKQVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIA
EECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHH
RENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVVQKMGNFDSVQANPYRPRFKR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ
CCHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRW
CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
KFSGDNQSTKDFKRTANINKQVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIA
EECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHH
RENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVVQKMGNFDSVQANPYRPRFKR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ
CCHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633