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The map label for this gene is rplW

Identifier: 13507906

GI number: 13507906

Start: 219474

End: 220187

Strand: Direct

Name: rplW

Synonym: MPN167

Alternate gene names: 13507906

Gene position: 219474-220187 (Clockwise)

Preceding gene: 13507905

Following gene: 13507907

Centisome position: 26.88

GC content: 41.04

Gene sequence:

>714_bases
ATGGATGTAACGAACGTACTGCTAAAACCAGTTCTAACCGAAAAGGTGTACTTCAACCAAATGGGTGAAACCAAGAAGTA
CGTCTTTGTGGTGAACCCTAAAGCAAGTAAAACACGCGTTAAACTAGCTTTTGAATTAGTGTATGGCATTAAGCCACTGA
AGGTTAACACCTTAATTAGAAAACCAACCACCATTCGCGGTGGGAGCCGTTTTCCTGGTTTGAGCAAACTAGAAAAGTTG
GCTGTGATTACCTTACCAAAGGGTATTGCCATTTCAGTTACTGGTGAAGCGCCAGAAAAAACCGATAAGCCAGCGGACAA
AACCACCCTTAAGGAAAGTACTGTTAAGGAGATTAAGGACACCAAAAACAGTCCAGAAGCTGTTGTGAAAACTGCTGTGG
AAGCGTTGCAAATTAAACCAACTGCCGCTCCTGTAACCACCGCCCCTCTACAAACCGTGGCGGTGAAGGTAGCTAAAGAA
GTTAAAGAAGTTAAGGTAGAAAAGCCGGTTAAAGTGGAAAAACCAACCAAACCGGCAAAGGTAGCAAAAGAAGCTAAAAC
GACCAAAGTAGCTAAGGAAACTAAAGCTGAAAAGTCAGTTCAAACAACCAAAGTAGCTAAGGAAACTAAAACTGAAAAGT
CAGCTAAAACTACCAAAACTACAGCTACAAAAACTACTAAAACTAAAACCACCAAAAAGGAGGTTAAAAAGTAA

Upstream 100 bases:

>100_bases
AACACCTAGACAAGGTTTCTGTAAGGGATCTGATGTTAGCTAACGCTCTTTTAGTTGAAAAAGAAGTTTTAAAAGCTTTG
GAGGGCAAATTTAAATAACC

Downstream 100 bases:

>100_bases
TGCCTATTAAGAAAATTATTAGTCGTTCTAACAGTGGGATCCACCACTCCACGGTAATTGACTATAAGAAGTTATTAACC
ACCAATAAGAACAAACCAGA

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIRKPTTIRGGSRFPGLSKLEKL
AVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKDTKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKE
VKEVKVEKPVKVEKPTKPAKVAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK

Sequences:

>Translated_237_residues
MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIRKPTTIRGGSRFPGLSKLEKL
AVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKDTKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKE
VKEVKVEKPVKVEKPTKPAKVAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK
>Mature_237_residues
MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIRKPTTIRGGSRFPGLSKLEKL
AVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKDTKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKE
VKEVKVEKPVKVEKPTKPAKVAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_MYCPN (P75578)

Other databases:

- EMBL:   U00089
- PIR:   S73990
- RefSeq:   NP_109855.1
- ProteinModelPortal:   P75578
- SMR:   P75578
- GeneID:   877178
- GenomeReviews:   U00089_GR
- KEGG:   mpn:MPN167
- OMA:   KINIFPE
- ProtClustDB:   PRK12280
- BioCyc:   MPNE272634:MPN167-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 25839; Mature: 25839

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIR
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEHEEC
KPTTIRGGSRFPGLSKLEKLAVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKD
CCCEECCCCCCCCHHHHHHEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
TKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKEVKEVKVEKPVKVEKPTKPAK
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
VAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIR
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEHEEC
KPTTIRGGSRFPGLSKLEKLAVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKD
CCCEECCCCCCCCHHHHHHEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
TKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKEVKEVKVEKPVKVEKPTKPAK
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
VAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633