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The map label for this gene is yciR [C]

Identifier: 13488231

GI number: 13488231

Start: 166707

End: 168668

Strand: Direct

Name: yciR [C]

Synonym: mlr9186

Alternate gene names: 13488231

Gene position: 166707-168668 (Clockwise)

Preceding gene: 13488230

Following gene: 13488368

Centisome position: 47.37

GC content: 56.37

Gene sequence:

>1962_bases
GTGATGCAGCGTCTGTCTGCCGCAAGGCTCGGTGACCTTCTGGCGGGAGACCTGCGTGTTTTTGGTGGGCCCTCCACGAT
CGAACCGCTCGCCGGCCGCATCAGGGCGGAGCAGGTCAGTATCGTGCTTCGCAACACGCCTCTTGGCATGGTTGCGAACA
TACTCAATGCGGTCACTTTTGTTATGGCGGTTTGGGGTTCGCCCGACCAGACAAAAGCCATCCTGTGGGCGAGTGTCATC
ATCGGCGCCGCTGGGTTCGTCGGCCTAAGAGCGAGATCATCGTTTCAGTCGGTCAAACCAAGGTCGGTGTCTCGCCGGAC
AACGCAAAACCTGGTGCGCAACGCATTCCTGTTCGGCACTTGGTGGGGCGCACTTCCCGTTCTGTTCTTCGGCGCGGCAA
CAAATGCCGCCCAGGTCGTCATCACCTGCCTGAGCGCGGGGATGATCGCGGGCGGCGCCGCGTCCTTTTACACGATTCCT
ATTGCGGCCATCGCGTATACGCTACCGATCTTCGTCGGTTCGGCGGTTGCGATTGTGTGGATGGAAGGCGCCGTCAATCT
GCCCGTCGCAATCCTGATAGTAAGCTACGCCATCACGCTGTTTCGTGCAGTGCTTGCTCACGCGTCCGAATTTACCCAAA
GCTTCATTCTGCAAACGGAAAGCGAAAATGCCATTCGCAGGGATGTCCTAACGAGTTTGCCAAACCGGTTCAGCTTCAAC
GAGCGGTTGGAGAACGCGTTGGTGGACGCAAGGCAGTTTGACCAGCACTTTGCGCTGCTTTTGTTCGATCTTAGCAATTT
CGACGAGGTGGATGATCACTTTGGCCGGGCAATGGCGGATGCCGTTTTGGTCGAAATGGCTGCGCGACTTCGCAAATCGA
CGCGGGAGAGCGATGGCATTGCCAGATTGGAGGGTGGCGAATTTGCAATAATCGCTGCGCGCGATATCAGGCCAGATCAA
ATCGGGTCCTTGGCCAAACAGATCATAGATGTCATGCGCGCTCCTTTCTTGATCGAAGGCCGCGAAATTTATTGCAGGAC
CTCTGTCGGTATCGCTTTGGCGCCCACTGACGGGTTGGATGCTAACCAGCTCTTGCGGTGCGTCGACACCGCGCTGCACA
GGGCCAAGACTCTGGGGGCGGGCTCCATCCAGTTTTTCAGCGCGAGCGACGATGACGCTGCCGCAAGGCGCAATGCCCTT
GAACGCGATCTGGCATCTGCACTCGCCAACGACGAGCTTTGGCTCGCCTTTCAACCATTTCTCGACCTCGGGAGCGAACG
CATCCGAGGTTTTGAAGCACTTCTGCGATGGCAGCATCCGACCCTTGGCGCGATCCCTCCGTCGGAGTTCATACCTATCG
CTGAAGAAACCGCATTGATTCACACCATCGGGCATTGGGCCGTCAAGACGGCTTGCCTGGCAGCAGTGCATTGGCCGCGC
GACCTCCGGGTTTCCGTCAATCTGTCGGCGGTCCAGCTTAAGGATAAGGCGTTATTGGATGGAATAGTAATGGCCTTGTC
CGAGACTGGCCTAGAGCCAAAGCGACTTGAGGTCGAGATCACGGAATCGGTTCTGATCTCGGATTTTGAAGACGCTATTT
CATTGTTACAATCGTTGAGTTTTCTGTCCGTCACGGTTGCCCTTGACGATTTTGGCACTGGCTTTTCATCCCTGACATAT
CTTCGCAAATTGCCTCTTTCGCGGCTCAAGATCGACCGGTCTTTTGTCCAGGATATGCTAGCCGATGCGGACTGCGCCGC
GATTGTAAGATCATTGGTTCAGCTGGCGCATGAGCTTCGAATTGAGGTAACGGCCGAAGGCGTGGAAACTCCCGAGCAGC
TCGACTATCTGCGCCGTGTCGGATGCGATGAAGCTCAAGGCTATTTGATCGGCAAACCTGTCCGGATAGACGACATTCCT
GGCATTGCCGCGAAGCCGTTTGGTCTGGAGCTAAGTAATTGA

Upstream 100 bases:

>100_bases
AAGGTAAAGGATTTGCGGTTGAAATTTACTTTTTCCGAATTGTTCGGTGCTAGGGGACCGACCAACACGCAGCTAACTAC
TCTACTGGGGGAGTGAAAGA

Downstream 100 bases:

>100_bases
ATCGCAGGACCCGGCATCTTGGTGCGATGGCCTGGTTGTCTCGTACCCCACGTTGACGGCCGCCTTACTGAGGTAGACCG
AAGGCCGAAAGTCCTGGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MMQRLSAARLGDLLAGDLRVFGGPSTIEPLAGRIRAEQVSIVLRNTPLGMVANILNAVTFVMAVWGSPDQTKAILWASVI
IGAAGFVGLRARSSFQSVKPRSVSRRTTQNLVRNAFLFGTWWGALPVLFFGAATNAAQVVITCLSAGMIAGGAASFYTIP
IAAIAYTLPIFVGSAVAIVWMEGAVNLPVAILIVSYAITLFRAVLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFN
ERLENALVDARQFDQHFALLLFDLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGIARLEGGEFAIIAARDIRPDQ
IGSLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLDANQLLRCVDTALHRAKTLGAGSIQFFSASDDDAAARRNAL
ERDLASALANDELWLAFQPFLDLGSERIRGFEALLRWQHPTLGAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPR
DLRVSVNLSAVQLKDKALLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLSFLSVTVALDDFGTGFSSLTY
LRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELRIEVTAEGVETPEQLDYLRRVGCDEAQGYLIGKPVRIDDIP
GIAAKPFGLELSN

Sequences:

>Translated_653_residues
MMQRLSAARLGDLLAGDLRVFGGPSTIEPLAGRIRAEQVSIVLRNTPLGMVANILNAVTFVMAVWGSPDQTKAILWASVI
IGAAGFVGLRARSSFQSVKPRSVSRRTTQNLVRNAFLFGTWWGALPVLFFGAATNAAQVVITCLSAGMIAGGAASFYTIP
IAAIAYTLPIFVGSAVAIVWMEGAVNLPVAILIVSYAITLFRAVLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFN
ERLENALVDARQFDQHFALLLFDLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGIARLEGGEFAIIAARDIRPDQ
IGSLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLDANQLLRCVDTALHRAKTLGAGSIQFFSASDDDAAARRNAL
ERDLASALANDELWLAFQPFLDLGSERIRGFEALLRWQHPTLGAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPR
DLRVSVNLSAVQLKDKALLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLSFLSVTVALDDFGTGFSSLTY
LRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELRIEVTAEGVETPEQLDYLRRVGCDEAQGYLIGKPVRIDDIP
GIAAKPFGLELSN
>Mature_653_residues
MMQRLSAARLGDLLAGDLRVFGGPSTIEPLAGRIRAEQVSIVLRNTPLGMVANILNAVTFVMAVWGSPDQTKAILWASVI
IGAAGFVGLRARSSFQSVKPRSVSRRTTQNLVRNAFLFGTWWGALPVLFFGAATNAAQVVITCLSAGMIAGGAASFYTIP
IAAIAYTLPIFVGSAVAIVWMEGAVNLPVAILIVSYAITLFRAVLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFN
ERLENALVDARQFDQHFALLLFDLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGIARLEGGEFAIIAARDIRPDQ
IGSLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLDANQLLRCVDTALHRAKTLGAGSIQFFSASDDDAAARRNAL
ERDLASALANDELWLAFQPFLDLGSERIRGFEALLRWQHPTLGAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPR
DLRVSVNLSAVQLKDKALLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLSFLSVTVALDDFGTGFSSLTY
LRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELRIEVTAEGVETPEQLDYLRRVGCDEAQGYLIGKPVRIDDIP
GIAAKPFGLELSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=411, Percent_Identity=35.5231143552311, Blast_Score=248, Evalue=9e-67,
Organism=Escherichia coli, GI87081921, Length=449, Percent_Identity=31.8485523385301, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=31.2206572769953, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=33.0677290836653, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=33.6065573770492, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=34.7280334728033, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=34.2629482071713, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=34.4827586206897, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=34.8, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=27.6422764227642, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=476, Percent_Identity=24.5798319327731, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.0411522633745, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1787410, Length=247, Percent_Identity=29.5546558704453, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=476, Percent_Identity=25, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786584, Length=313, Percent_Identity=25.8785942492013, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=29.3333333333333, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 71044; Mature: 71044

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQRLSAARLGDLLAGDLRVFGGPSTIEPLAGRIRAEQVSIVLRNTPLGMVANILNAVTF
CCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH
VMAVWGSPDQTKAILWASVIIGAAGFVGLRARSSFQSVKPRSVSRRTTQNLVRNAFLFGT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
WWGALPVLFFGAATNAAQVVITCLSAGMIAGGAASFYTIPIAAIAYTLPIFVGSAVAIVW
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
MEGAVNLPVAILIVSYAITLFRAVLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFN
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCHH
ERLENALVDARQFDQHFALLLFDLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ARLEGGEFAIIAARDIRPDQIGSLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLD
EEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCEEEEEECCCEEECCCCCCC
ANQLLRCVDTALHRAKTLGAGSIQFFSASDDDAAARRNALERDLASALANDELWLAFQPF
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
LDLGSERIRGFEALLRWQHPTLGAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPR
HHCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DLRVSVNLSAVQLKDKALLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLS
CEEEEEEEHHEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
FLSVTVALDDFGTGFSSLTYLRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELR
HHEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHE
IEVTAEGVETPEQLDYLRRVGCDEAQGYLIGKPVRIDDIPGIAAKPFGLELSN
EEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMQRLSAARLGDLLAGDLRVFGGPSTIEPLAGRIRAEQVSIVLRNTPLGMVANILNAVTF
CCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH
VMAVWGSPDQTKAILWASVIIGAAGFVGLRARSSFQSVKPRSVSRRTTQNLVRNAFLFGT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
WWGALPVLFFGAATNAAQVVITCLSAGMIAGGAASFYTIPIAAIAYTLPIFVGSAVAIVW
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
MEGAVNLPVAILIVSYAITLFRAVLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFN
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCHH
ERLENALVDARQFDQHFALLLFDLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ARLEGGEFAIIAARDIRPDQIGSLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLD
EEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCEEEEEECCCEEECCCCCCC
ANQLLRCVDTALHRAKTLGAGSIQFFSASDDDAAARRNALERDLASALANDELWLAFQPF
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
LDLGSERIRGFEALLRWQHPTLGAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPR
HHCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DLRVSVNLSAVQLKDKALLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLS
CEEEEEEEHHEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
FLSVTVALDDFGTGFSSLTYLRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELR
HHEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHE
IEVTAEGVETPEQLDYLRRVGCDEAQGYLIGKPVRIDDIPGIAAKPFGLELSN
EEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]