BacMap

Definition	Mesorhizobium loti MAFF303099 plasmid pMLa, complete sequence.
Accession	NC_002679
Length	351,911

Click here to switch to the map view.

The map label for this gene is linC [H]

Identifier: 13488194

GI number: 13488194

Start: 33864

End: 34640

Strand: Direct

Name: linC [H]

Synonym: mlr9033

Alternate gene names: 13488194

Gene position: 33864-34640 (Clockwise)

Preceding gene: 13488193

Following gene: 13488195

Centisome position: 9.62

GC content: 57.92

Gene sequence:

>777_bases
ATGACTGCCCTTAAAGACAAGCGCGCGATCATAACAGCCGGCGCGAGTGGAATCGGTCGCGTAGTTACCAAGAAAATGAT
TGCAGCCGGCGCCAAGGTCGCCGTCTGCGACGTCGACGAAGATGCCGTCAACTCCTTCGCCGCCGAAAACCCTGACTCGA
CCGCGGTTGTATGCGATGTGGCCGATCCGACGAAGGTTCCAGAAGCAATCGAGACGATGTTGAAAGGCCTCGGCGGGGGT
ACTGACATCCTTTTCAACAACGCTGGAATCGCGGGACCGACGGCTGCTATCGAGGATATCTCTCCAGAAGAATGGGGCAG
GACCCTCGATGTAAATCTTACGGCCCAGTACCTGTTCATTCGAGGCGTTATGGCTGGGATGAAGGCTCAGCGTTCAGGGG
TCATACTGAACATGTCTTCGGCAGCTGGTCGTCTCGGCATGCCGATGCGCACGCCATACGCAGCGGCAAAATGGGCCGTG
ATCGGATTGACGCAATCCCTGGCGATGGAAGTCGGCAAGTTCGGAATACGGGTCAACGCCATTCTTCCAGGGTCTGTCCG
CGGGCCACGGATGGAGCGCGTAATGGCGGCCAGAGCCAAGTTGACCGGACGGCCACTCGCGGAAATCGAGGCTGAAGAAG
TGGCAACGATGTCTTTGGGACGAATGATCGAGCCAGAGGAAATCGCTGACCTAGCGATCTTCGTCTCGTCTGACGCCGGT
CGATCGATCTCCGGGCAATCGCTGGGGGTGTGCGGCAACACCGAAATACTCAGATAG

Upstream 100 bases:

>100_bases
TTTCGCTGGTGAAGCGGGCGCGTGAGATCGTGGAGCGGATGGGCGTGCGGATTATGTCCTCATCCGCAACGCGTGATCGC
CTCGGCCTAGGTGCAGCCGC

Downstream 100 bases:

>100_bases
CTCATCTTGGGGAATCCAAAACTAGGGAGAATAAAATGAACTTGATGACAAACGTAATTGTCGCTGGCGTTTTCGCTTGC
GGGCTCACGGGATACGCGAC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 2,5-DDOL dehydrogenase [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTALKDKRAIITAGASGIGRVVTKKMIAAGAKVAVCDVDEDAVNSFAAENPDSTAVVCDVADPTKVPEAIETMLKGLGGG
TDILFNNAGIAGPTAAIEDISPEEWGRTLDVNLTAQYLFIRGVMAGMKAQRSGVILNMSSAAGRLGMPMRTPYAAAKWAV
IGLTQSLAMEVGKFGIRVNAILPGSVRGPRMERVMAARAKLTGRPLAEIEAEEVATMSLGRMIEPEEIADLAIFVSSDAG
RSISGQSLGVCGNTEILR

Sequences:

>Translated_258_residues
MTALKDKRAIITAGASGIGRVVTKKMIAAGAKVAVCDVDEDAVNSFAAENPDSTAVVCDVADPTKVPEAIETMLKGLGGG
TDILFNNAGIAGPTAAIEDISPEEWGRTLDVNLTAQYLFIRGVMAGMKAQRSGVILNMSSAAGRLGMPMRTPYAAAKWAV
IGLTQSLAMEVGKFGIRVNAILPGSVRGPRMERVMAARAKLTGRPLAEIEAEEVATMSLGRMIEPEEIADLAIFVSSDAG
RSISGQSLGVCGNTEILR
>Mature_257_residues
TALKDKRAIITAGASGIGRVVTKKMIAAGAKVAVCDVDEDAVNSFAAENPDSTAVVCDVADPTKVPEAIETMLKGLGGGT
DILFNNAGIAGPTAAIEDISPEEWGRTLDVNLTAQYLFIRGVMAGMKAQRSGVILNMSSAAGRLGMPMRTPYAAAKWAVI
GLTQSLAMEVGKFGIRVNAILPGSVRGPRMERVMAARAKLTGRPLAEIEAEEVATMSLGRMIEPEEIADLAIFVSSDAGR
SISGQSLGVCGNTEILR

Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=30.859375, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=30.4721030042918, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=28.735632183908, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI66933014, Length=218, Percent_Identity=31.1926605504587, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=27.5193798449612, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=33, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI4503301, Length=206, Percent_Identity=30.5825242718447, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=32.2404371584699, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=27.7992277992278, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=28.7179487179487, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=28.0632411067194, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI157739938, Length=198, Percent_Identity=26.2626262626263, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=27.2, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.1338582677165, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=28.8659793814433, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=25.0980392156863, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI210032110, Length=181, Percent_Identity=27.0718232044199, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=27.6041666666667, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI150247226, Length=218, Percent_Identity=27.5229357798165, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4758504, Length=249, Percent_Identity=27.710843373494, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI302344755, Length=105, Percent_Identity=35.2380952380952, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=27.3809523809524, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI7657478, Length=119, Percent_Identity=32.7731092436975, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI40548397, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI214010158, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI214010156, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI22758144, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=34.136546184739, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=31.496062992126, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=29.296875, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=27.34375, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787905, Length=253, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.0632411067194, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=28.740157480315, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=29.4820717131474, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=28.3464566929134, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=26.3358778625954, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=24.4094488188976, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787526, Length=194, Percent_Identity=25.2577319587629, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787820, Length=189, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367365, Length=227, Percent_Identity=30.3964757709251, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=34.7490347490347, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=33.0769230769231, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=29.5719844357977, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17561272, Length=217, Percent_Identity=34.1013824884793, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=28.9156626506024, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=28.7958115183246, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=29.7397769516729, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=25.8687258687259, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=217, Percent_Identity=30.4147465437788, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=283, Percent_Identity=30.3886925795053, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=276, Percent_Identity=29.7101449275362, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=226, Percent_Identity=27.4336283185841, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=27.8810408921933, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=29.520295202952, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=229, Percent_Identity=28.82096069869, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=27.1317829457364, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=261, Percent_Identity=27.2030651340996, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=27.7992277992278, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=175, Percent_Identity=27.4285714285714, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=170, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=252, Percent_Identity=28.968253968254, Blast_Score=89, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=27.1317829457364, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.2564102564103, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320089, Length=191, Percent_Identity=28.7958115183246, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=30.7086614173228, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=29.296875, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=32.5, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=28.4046692607004, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644337, Length=179, Percent_Identity=28.4916201117318, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=28.0155642023346, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=28.6852589641434, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737361, Length=244, Percent_Identity=28.2786885245902, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=27.4590163934426, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221331218, Length=193, Percent_Identity=31.6062176165803, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24665243, Length=193, Percent_Identity=31.6062176165803, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI161076933, Length=183, Percent_Identity=26.775956284153, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=26.7441860465116, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18859837, Length=187, Percent_Identity=30.4812834224599, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331216, Length=194, Percent_Identity=31.9587628865979, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665247, Length=194, Percent_Identity=31.9587628865979, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26893; Mature: 26761

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALKDKRAIITAGASGIGRVVTKKMIAAGAKVAVCDVDEDAVNSFAAENPDSTAVVCDV
CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEC
ADPTKVPEAIETMLKGLGGGTDILFNNAGIAGPTAAIEDISPEEWGRTLDVNLTAQYLFI
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCHHHHCCEEEEEEHHHHHHH
RGVMAGMKAQRSGVILNMSSAAGRLGMPMRTPYAAAKWAVIGLTQSLAMEVGKFGIRVNA
HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHEEHHHHHHHHHHHHCCEEEEE
ILPGSVRGPRMERVMAARAKLTGRPLAEIEAEEVATMSLGRMIEPEEIADLAIFVSSDAG
EECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCEEEEEEECCCC
RSISGQSLGVCGNTEILR
CCCCCCEEECCCCCCCCC
>Mature Secondary Structure 
TALKDKRAIITAGASGIGRVVTKKMIAAGAKVAVCDVDEDAVNSFAAENPDSTAVVCDV
CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEC
ADPTKVPEAIETMLKGLGGGTDILFNNAGIAGPTAAIEDISPEEWGRTLDVNLTAQYLFI
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCHHHHCCEEEEEEHHHHHHH
RGVMAGMKAQRSGVILNMSSAAGRLGMPMRTPYAAAKWAVIGLTQSLAMEVGKFGIRVNA
HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHEEHHHHHHHHHHHHCCEEEEE
ILPGSVRGPRMERVMAARAKLTGRPLAEIEAEEVATMSLGRMIEPEEIADLAIFVSSDAG
EECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCEEEEEEECCCC
RSISGQSLGVCGNTEILR
CCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7515041; 12450824 [H]