Click here to switch to the map view.

The map label for this gene is 13488160

Identifier: 13488160

GI number: 13488160

Start: 307677

End: 308882

Strand: Reverse

Name: 13488160

Synonym: mll9351

Alternate gene names: NA

Gene position: 308882-307677 (Counterclockwise)

Preceding gene: 13488161

Following gene: 13488159

Centisome position: 87.77

GC content: 60.86

Gene sequence:

>1206_bases
ATGGAGACGGGTATTGCAACGACGCCCTTTGGGCGGCGGCCGATGTCGCTTGCCATGCTGGCAGCGCAAAACGAGTCACG
GGAGATCCCCAAGGGCAAGGTCATCGACAAGTGGCAGATCTATCGCAACCTCTGCGAGGGCAAGAGCATCGTCGGCATCG
GCGATCGCGCCCTGGCCGTCCTGAATGCGTTGCTGTCATTCTATCCTGACAGCGAGCTGAGTGAGGAAAACGGCCTCATC
GTCTTCCCCTCGAACGCACAGCTGTCCCTCAGGGCGCACGGCATGCCGGATTCCACCTTGCGGAGGAACCTGGCGGAACT
GGTGGATTGCGGTCTAGTCATCCGTCGGGACAGCCCGAACGGCAAGCGTTATGCACGGAAGGGCAGGGGTGGGGAGATCG
AGGAAGCATTTGGCTTTTCCCTGGCGCCGCTGCTGGCCCGTGCTCACGAGTTCGAGGCGGCGGCCGAGCGTGTTCGCGCC
GACAACAGGGCGCTCAGGCTTATGAGGGAACGCATCACGCTACACCGCCGGGATATCCAGAAGTTGGTCGAGGCGGCCGT
TGAGGAAGACGTGCCGGGCGACTGGGGAGGCCTGTGGAGGCGTTTCCGCGCCGTTGTGGAGGCAATTCCGCGCCGAGCAT
GCATTGCCGAGCTCGAACCGATCGTGGCCGATCTGGCCGCGCTGCGTGATGAGGTGGATAAGCTGCTGGAAATCCATATG
AAATCCACGCATCCGAGCGGCAATGACTCTCAAAACGAGCGGCAGCAATCTGATTCAAATACCGACTCTATTTTTGAATT
TGAACCTGCTTTAGAGAAAAGCGGGGCGACGGCCGAGCCAAGGACGAGGACCGCAGAGGCGCCGAAAACATACCCGCTGG
GGATGGTGCTGAAGGCCTGCCCCGAAATTGCGGATTATGCCGTCGACGGGATCGGCAATTGGCGCGATCTCATGATAACG
GCTGCCCAGGTGCGGGGATATCTGGGCGTTTCGCCGTCAGCGTATGAGGAGGCTTGCCATGTGATGGGCCAGGAGATCGC
GGCGATCGTGATTGCCTGCATCCTGCAAAGGGCGCAGCACATCAACTCGGCCGGCGGCTATTTGCGGGTGCTGACCGAGA
AGGCGAGGGCAGGGGAGTTTTCGGTCGGACCGATGCTCATGGCTGCTTTGAAAGCTAATGGGTCACCTACCAGGATGGCC
GGGTAA

Upstream 100 bases:

>100_bases
TTGTCGCAAACTGAGAATCGCATTTCCACGAATCACTGTCAAGAGTCTAGGCGTCGATTCGGCGAGCAGATTTCTTTTGC
CTAATCGAGGGTGAAAGAAA

Downstream 100 bases:

>100_bases
CCGGCTAATGTGACGATGGCCGCCGTCGCGGCTTGTTGATGACAGTCAGAAACTGTGCTTCTTCAGATCCCAACGGCAGG
ACCAGCCGTCCCCCCGGTTT

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
METGIATTPFGRRPMSLAMLAAQNESREIPKGKVIDKWQIYRNLCEGKSIVGIGDRALAVLNALLSFYPDSELSEENGLI
VFPSNAQLSLRAHGMPDSTLRRNLAELVDCGLVIRRDSPNGKRYARKGRGGEIEEAFGFSLAPLLARAHEFEAAAERVRA
DNRALRLMRERITLHRRDIQKLVEAAVEEDVPGDWGGLWRRFRAVVEAIPRRACIAELEPIVADLAALRDEVDKLLEIHM
KSTHPSGNDSQNERQQSDSNTDSIFEFEPALEKSGATAEPRTRTAEAPKTYPLGMVLKACPEIADYAVDGIGNWRDLMIT
AAQVRGYLGVSPSAYEEACHVMGQEIAAIVIACILQRAQHINSAGGYLRVLTEKARAGEFSVGPMLMAALKANGSPTRMA
G

Sequences:

>Translated_401_residues
METGIATTPFGRRPMSLAMLAAQNESREIPKGKVIDKWQIYRNLCEGKSIVGIGDRALAVLNALLSFYPDSELSEENGLI
VFPSNAQLSLRAHGMPDSTLRRNLAELVDCGLVIRRDSPNGKRYARKGRGGEIEEAFGFSLAPLLARAHEFEAAAERVRA
DNRALRLMRERITLHRRDIQKLVEAAVEEDVPGDWGGLWRRFRAVVEAIPRRACIAELEPIVADLAALRDEVDKLLEIHM
KSTHPSGNDSQNERQQSDSNTDSIFEFEPALEKSGATAEPRTRTAEAPKTYPLGMVLKACPEIADYAVDGIGNWRDLMIT
AAQVRGYLGVSPSAYEEACHVMGQEIAAIVIACILQRAQHINSAGGYLRVLTEKARAGEFSVGPMLMAALKANGSPTRMA
G
>Mature_401_residues
METGIATTPFGRRPMSLAMLAAQNESREIPKGKVIDKWQIYRNLCEGKSIVGIGDRALAVLNALLSFYPDSELSEENGLI
VFPSNAQLSLRAHGMPDSTLRRNLAELVDCGLVIRRDSPNGKRYARKGRGGEIEEAFGFSLAPLLARAHEFEAAAERVRA
DNRALRLMRERITLHRRDIQKLVEAAVEEDVPGDWGGLWRRFRAVVEAIPRRACIAELEPIVADLAALRDEVDKLLEIHM
KSTHPSGNDSQNERQQSDSNTDSIFEFEPALEKSGATAEPRTRTAEAPKTYPLGMVLKACPEIADYAVDGIGNWRDLMIT
AAQVRGYLGVSPSAYEEACHVMGQEIAAIVIACILQRAQHINSAGGYLRVLTEKARAGEFSVGPMLMAALKANGSPTRMA
G

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes possible replication protein C (repC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 44002; Mature: 44002

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGIATTPFGRRPMSLAMLAAQNESREIPKGKVIDKWQIYRNLCEGKSIVGIGDRALAV
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHH
LNALLSFYPDSELSEENGLIVFPSNAQLSLRAHGMPDSTLRRNLAELVDCGLVIRRDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCC
GKRYARKGRGGEIEEAFGFSLAPLLARAHEFEAAAERVRADNRALRLMRERITLHRRDIQ
CHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLVEAAVEEDVPGDWGGLWRRFRAVVEAIPRRACIAELEPIVADLAALRDEVDKLLEIHM
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSTHPSGNDSQNERQQSDSNTDSIFEFEPALEKSGATAEPRTRTAEAPKTYPLGMVLKAC
HCCCCCCCCCHHHHHHCCCCCCCEEEECHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
PEIADYAVDGIGNWRDLMITAAQVRGYLGVSPSAYEEACHVMGQEIAAIVIACILQRAQH
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INSAGGYLRVLTEKARAGEFSVGPMLMAALKANGSPTRMAG
HCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
METGIATTPFGRRPMSLAMLAAQNESREIPKGKVIDKWQIYRNLCEGKSIVGIGDRALAV
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHH
LNALLSFYPDSELSEENGLIVFPSNAQLSLRAHGMPDSTLRRNLAELVDCGLVIRRDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCC
GKRYARKGRGGEIEEAFGFSLAPLLARAHEFEAAAERVRADNRALRLMRERITLHRRDIQ
CHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLVEAAVEEDVPGDWGGLWRRFRAVVEAIPRRACIAELEPIVADLAALRDEVDKLLEIHM
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSTHPSGNDSQNERQQSDSNTDSIFEFEPALEKSGATAEPRTRTAEAPKTYPLGMVLKAC
HCCCCCCCCCHHHHHHCCCCCCCEEEECHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
PEIADYAVDGIGNWRDLMITAAQVRGYLGVSPSAYEEACHVMGQEIAAIVIACILQRAQH
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INSAGGYLRVLTEKARAGEFSVGPMLMAALKANGSPTRMAG
HCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]