Click here to switch to the map view.

The map label for this gene is ygiF [C]

Identifier: 13488075

GI number: 13488075

Start: 90038

End: 91540

Strand: Reverse

Name: ygiF [C]

Synonym: mll9114

Alternate gene names: 13488075

Gene position: 91540-90038 (Counterclockwise)

Preceding gene: 13488338

Following gene: 13488074

Centisome position: 26.01

GC content: 60.75

Gene sequence:

>1503_bases
ATGTCCGGTGGTTCCTCCGATTACCTGAAGCGGTGCCGCGCCGAGGACATCATGCAGGAAACGGAACTGAAGCTCGAGCT
TTCGCAATCGGGTGCTGGATCGCTCCTGAGGAAAAATCCGTTCGGATCCTCGCCCACCATTCTTCAGCAGAGATCCATCT
ATTTCGACACCCCCGGATGGGATTTGTCCAAGCGCAGCCTGTCGCTTCGCATTCGGCAATCGGGAAATGAAAAGATCCAA
ACCCTCAAAGCCGCCGATGGCACGGCGGCCGGATCGTTCACACGCCAGGAATGGGAGCGACCGGTCGCCGGCGATACACC
GATAGTTGACGATCCGCAGATCCGAGACCTGCGTGCAGGAGCTGGCCCAGAGCTCGCGCCCTTGTTCGAGGTTCATGTCA
AACGGCATCGTTGGAATGTTGTGGATGGCGACGCCACACTCGAAGTCACTTTGGATCTTGGCAAGGTCGTTGCAGCCGAT
CGCGAGGCGCCGCTGTGCGAGATCGAGTTGGAAAAGAAGGCTGGCTCACCGACGGCGCTGTTTGCACTCGCCCGGAAAGT
CGACCTGATCACGCCGGCGCATCTCGGGGTGCTGAGCAAAGCGGAACGGGGCTATCGTCTGCTTGGCTCGGCGCCCGGTG
CTGCGAAGACGGCTTCGATCCCGCTCACGTGCGAGATGAGCGCGGCAACGGCCTTCGTGCGCATCGCCACGGCGTGTCTC
AGACAGTTTCGCCTCAATGAAATGGTGCTGAGTTGGTCCCGCGATGCCGAGGCCCTGCACCAGGCTCGCGTGTCGCTGCG
ACGGCTACGCTCGCTATGCTCGATCTGCAAGTCGTTGTTCGACGACAGCCGTTTCGACCACATGCGCGAAGAATTGACAT
GGCTCGCCTCGGAATTTGGCGATGCGCGCAATATCGACGTGATGATCGACCGCGCTTCAAGCGAGGCTCTTTCAAGCCGT
CTTCAAGACGCGCGCGAGGACGCCTATGCCGCGGTCGAAGCATCGCTCTCCTCGGCGCGCGCCCGCGCGCTGATGATCGA
TGCCGCTGAGTGGATTTCCATCAGGAGTTGGCGAGCCGACCAGGCGGACGAAACGCTTCACGAGCACTCGTCACGGGGTT
TCGCCTCCGGTGTATTTGATAAACTTTGGAAAAAGGTGGCGAAGGGCGGCAGCGATCTCATCGACGCCGATGACGAGACC
CGCCACGAAGTGCGCATCGTCGCAAAGAAACTGCGCTATGCGGCGGAGTTCTTCCAGCCGCTTTACAAGAGCAAGGCCGA
AGCCAAACGCCATCGACGGTTCATTAGGGCGATGGAGGACCTGCAGGATAACCTCGGCCGCCTCAACGATCTCGCCACCG
CCCCTGGTATGCTGGCGGCGCTGGAGCTTTCGGACATGGCTGGCGCGAAGGATCTCTTCAGCGCCGAAGACAAGTCCAAG
CTTCTTGAGGACGCCGCGGAGGCGCACGACGCTTTGGTCAACACGAGGCGCTTCTGGCGATGA

Upstream 100 bases:

>100_bases
TGATGGTCCGCTCTGCTTTGGCGCGCAGTAGCGCCTTGAGCTTGAGGTTCCGTCGCAGTTGGTCGAGGTGGGCGATTGTT
TGTGACAGTCTTATGACGCA

Downstream 100 bases:

>100_bases
GCACCCAGTGCTCGAGACCGAGCGAGCCGGCACGGTCACGACACCCATTTCATCCAAGCGCGCTCGATGACCGAGCATGG
CTACCAGGGGCGCACTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MSGGSSDYLKRCRAEDIMQETELKLELSQSGAGSLLRKNPFGSSPTILQQRSIYFDTPGWDLSKRSLSLRIRQSGNEKIQ
TLKAADGTAAGSFTRQEWERPVAGDTPIVDDPQIRDLRAGAGPELAPLFEVHVKRHRWNVVDGDATLEVTLDLGKVVAAD
REAPLCEIELEKKAGSPTALFALARKVDLITPAHLGVLSKAERGYRLLGSAPGAAKTASIPLTCEMSAATAFVRIATACL
RQFRLNEMVLSWSRDAEALHQARVSLRRLRSLCSICKSLFDDSRFDHMREELTWLASEFGDARNIDVMIDRASSEALSSR
LQDAREDAYAAVEASLSSARARALMIDAAEWISIRSWRADQADETLHEHSSRGFASGVFDKLWKKVAKGGSDLIDADDET
RHEVRIVAKKLRYAAEFFQPLYKSKAEAKRHRRFIRAMEDLQDNLGRLNDLATAPGMLAALELSDMAGAKDLFSAEDKSK
LLEDAAEAHDALVNTRRFWR

Sequences:

>Translated_500_residues
MSGGSSDYLKRCRAEDIMQETELKLELSQSGAGSLLRKNPFGSSPTILQQRSIYFDTPGWDLSKRSLSLRIRQSGNEKIQ
TLKAADGTAAGSFTRQEWERPVAGDTPIVDDPQIRDLRAGAGPELAPLFEVHVKRHRWNVVDGDATLEVTLDLGKVVAAD
REAPLCEIELEKKAGSPTALFALARKVDLITPAHLGVLSKAERGYRLLGSAPGAAKTASIPLTCEMSAATAFVRIATACL
RQFRLNEMVLSWSRDAEALHQARVSLRRLRSLCSICKSLFDDSRFDHMREELTWLASEFGDARNIDVMIDRASSEALSSR
LQDAREDAYAAVEASLSSARARALMIDAAEWISIRSWRADQADETLHEHSSRGFASGVFDKLWKKVAKGGSDLIDADDET
RHEVRIVAKKLRYAAEFFQPLYKSKAEAKRHRRFIRAMEDLQDNLGRLNDLATAPGMLAALELSDMAGAKDLFSAEDKSK
LLEDAAEAHDALVNTRRFWR
>Mature_499_residues
SGGSSDYLKRCRAEDIMQETELKLELSQSGAGSLLRKNPFGSSPTILQQRSIYFDTPGWDLSKRSLSLRIRQSGNEKIQT
LKAADGTAAGSFTRQEWERPVAGDTPIVDDPQIRDLRAGAGPELAPLFEVHVKRHRWNVVDGDATLEVTLDLGKVVAADR
EAPLCEIELEKKAGSPTALFALARKVDLITPAHLGVLSKAERGYRLLGSAPGAAKTASIPLTCEMSAATAFVRIATACLR
QFRLNEMVLSWSRDAEALHQARVSLRRLRSLCSICKSLFDDSRFDHMREELTWLASEFGDARNIDVMIDRASSEALSSRL
QDAREDAYAAVEASLSSARARALMIDAAEWISIRSWRADQADETLHEHSSRGFASGVFDKLWKKVAKGGSDLIDADDETR
HEVRIVAKKLRYAAEFFQPLYKSKAEAKRHRRFIRAMEDLQDNLGRLNDLATAPGMLAALELSDMAGAKDLFSAEDKSKL
LEDAAEAHDALVNTRRFWR

Specific function: Unknown

COG id: COG3025

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygiF [H]

Homologues:

Organism=Escherichia coli, GI1789434, Length=205, Percent_Identity=31.7073170731707, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 55473; Mature: 55342

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGSSDYLKRCRAEDIMQETELKLELSQSGAGSLLRKNPFGSSPTILQQRSIYFDTPGW
CCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCC
DLSKRSLSLRIRQSGNEKIQTLKAADGTAAGSFTRQEWERPVAGDTPIVDDPQIRDLRAG
CCCCHHHEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCC
AGPELAPLFEVHVKRHRWNVVDGDATLEVTLDLGKVVAADREAPLCEIELEKKAGSPTAL
CCCCHHHHHHHHHHHHCCCEECCCCEEEEEEEHHHHHHCCCCCCEEEEEECCCCCCHHHH
FALARKVDLITPAHLGVLSKAERGYRLLGSAPGAAKTASIPLTCEMSAATAFVRIATACL
HHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH
RQFRLNEMVLSWSRDAEALHQARVSLRRLRSLCSICKSLFDDSRFDHMREELTWLASEFG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
DARNIDVMIDRASSEALSSRLQDAREDAYAAVEASLSSARARALMIDAAEWISIRSWRAD
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCC
QADETLHEHSSRGFASGVFDKLWKKVAKGGSDLIDADDETRHEVRIVAKKLRYAAEFFQP
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LYKSKAEAKRHRRFIRAMEDLQDNLGRLNDLATAPGMLAALELSDMAGAKDLFSAEDKSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEHHHHCCCHHHHCCHHHHH
LLEDAAEAHDALVNTRRFWR
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGGSSDYLKRCRAEDIMQETELKLELSQSGAGSLLRKNPFGSSPTILQQRSIYFDTPGW
CCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCC
DLSKRSLSLRIRQSGNEKIQTLKAADGTAAGSFTRQEWERPVAGDTPIVDDPQIRDLRAG
CCCCHHHEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCC
AGPELAPLFEVHVKRHRWNVVDGDATLEVTLDLGKVVAADREAPLCEIELEKKAGSPTAL
CCCCHHHHHHHHHHHHCCCEECCCCEEEEEEEHHHHHHCCCCCCEEEEEECCCCCCHHHH
FALARKVDLITPAHLGVLSKAERGYRLLGSAPGAAKTASIPLTCEMSAATAFVRIATACL
HHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH
RQFRLNEMVLSWSRDAEALHQARVSLRRLRSLCSICKSLFDDSRFDHMREELTWLASEFG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
DARNIDVMIDRASSEALSSRLQDAREDAYAAVEASLSSARARALMIDAAEWISIRSWRAD
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCC
QADETLHEHSSRGFASGVFDKLWKKVAKGGSDLIDADDETRHEVRIVAKKLRYAAEFFQP
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LYKSKAEAKRHRRFIRAMEDLQDNLGRLNDLATAPGMLAALELSDMAGAKDLFSAEDKSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEHHHHCCCHHHHCCHHHHH
LLEDAAEAHDALVNTRRFWR
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]