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The map label for this gene is yciR [C]

Identifier: 13476460

GI number: 13476460

Start: 6444052

End: 6446226

Strand: Reverse

Name: yciR [C]

Synonym: mll7787

Alternate gene names: 13476460

Gene position: 6446226-6444052 (Counterclockwise)

Preceding gene: 13476461

Following gene: 13476458

Centisome position: 91.62

GC content: 62.9

Gene sequence:

>2175_bases
GTGGTGTTCGATCACGCACCGCAGGCGCGCCTCATGCCCGTCGTGGATGTCAAGGATGGTTCGATCGTGCCGGAGCGGGC
GGCCGAAGGCGTGGAGCGCCCGCGCCGCATGGAAGACGAGCTGCGCGAACAGAACGAACGCTTTTCGGCCGCTGTCGAGA
ACATGTCGCATGGGTTGTGCATGTTCGACGCCGACGAACGCATGATCATCTGCAACGGCAACTACATCAACATCTTCTGC
CTCGACGCCAAGCTGGTACGACCGGGCATCCACTTCATCGACATCCTGCGGCACAGCGTCGACATCGGCATCGCCTCGCA
AAGCGCCGACGAGCTCTATGCCGTCCGCAAACCCTATATCGACCAGGCGAAACCCTCGACCTACGAAGAGACGCTGTCGG
ATGGTCGCATCATCAACATCTCGCACCGCCCGCTGGCCCTGGGCGGCTGGGTTTCGATCTACGAGGACATCACCGAACAG
CGGCGCGCCGAGCAGGACCTCAAGGAGCAACATCGCCGTTTCGACGCGGCACTCGCCAACATGTCGCAAGGCCTGCTGAT
GTACGACGCCGACGGCAAGATGATCGTGCGCAACCGGCGTTTTCTGGAGCTCTACAACGTTACCGCGGCGGACTTCCCGC
TTGGAACGACGCATCGCGATGCGCTGGAAAAACTGCTGGAAATCGGCATCTATCAGCAGATCGACGTCGACAGCGAAGTC
GCCAAGACCGAGGCCTGTCTGGTGGTGGCAAAAATGCACTCGGCCTATCGCTACCTAACCGACGGCAGGACGGTTCTGGT
CACGCGCCAGCCGATGAGCGGCGGCGGCTGGGTGGTGACCTTCGACGACGTCACCGAACGTCGACGCACCGAAGAGCGCA
TGATCCATCTTGCGCATCACGACACGCTGACCGGACTGCCCAATCGCTCGATGTTCCGCGAACGGCTCGATTTGGCGCTG
GAGGATGCGGCGGCACCGCCGCTGGCGATCTTCTCGCTCGATCTCGACCGCTTCAAGGCGATCAACGACACCTGGGGACA
TCCCGCCGGCGACTGGCTCTTGAAAAGCGTCGCCGAGAGGCTGCAGCGTTGCCTGCACAATGAGACGGACGTCGTCGCCC
GCTTCGGCGGCGACGAGTTCGTCGTCATGCAGTTCAACTCGAAGGGCATCGCCGATGCCGAAAAACTGGCGAAACGCATC
GTCGAGGCCATCGCAAAACAGTTTCGCGACAAGAGCCGGGATATGCATATCGGCATCAGCCTGGGCATCGCTGTTTTCCC
CCAAGATGGCAGGGACGCCGATACGCTGCTGAAAAACGCCGATACGGCGCTCTATCGGGCCAAGAGCGAAGGGAGAAACC
TCTATCGCTTCTTCGAGCCCGCGATGGACGCCATCGTGCAGGCTCGGCGGGCGCTCGAAGTCGACCTCGACGCGGCGCTG
CCGCGCCAGGAGTTCGATCTCGATTTCCAGCCCATCATGAACATCGCCTCCGGCGAGATCATCGGCGCCGAGGCCTTGAT
GCGCTGGCATTCCCCTGCGCGCGGCACTGTCGCGCCGGACGCGTTCATTCCCGTCGCCGAAGAGACCGGGCTGATCGTGC
CGCTCGGCGAGTGGGCGCTGAGGAAGGCCTGCGCGGCGGCGGCCAGCTGGCCTCCCGGCCTGCGCATCGCGGTCAATGTC
TCGGCCGTGCAGCTCAAAAGCGGTGGGTTTGCCCGCAGCGTCATCTCGGCCTTGGCTTTTTCCGGCGTGCCGGCCGGACA
GCTGGAGCTGGAAATCACCGAAACCGTGCTGATGGACGAGAGCAAAGCCGTGCTGAAGACGCTGCGGCAGCTGCGCGATC
TCGGCATCCGCATCGCGCTGGATGATTTCGGCACCGGCTATTCCTCGCTCGCCTATCTCAGGCGTTTCCCGGTCGACAAG
ATCAAGATCGATCGCTCCTTCATCCGCGATATGGGCAATCGCGACACGGCGGCGATCGTCCGCACCATCATCGGGCTCGG
CAACGAGCTTGGTATTGTCGTCACCGCCGAGGGCGTCGAGACCGAGGTGCAACTCGACATGCTGCGCGACAATGGTTGTG
AAGAGGCGCAAGGCTATTTGATCGGCGTGCCGTCGAAGGCGGCGGACATCCAGCGTCTGTTGAAGGCGCGTGCGCTACAC
AGCCAGACCGGCTGA

Upstream 100 bases:

>100_bases
CCTTCCTGAAGCGGTTTTCGGCGCTTGAGAAATCGCGGCATCCAGTTGCGACGTCGGTGGTAGGGTAGAGAACGCTAAAT
TAACCGGAAACGGCAACAGT

Downstream 100 bases:

>100_bases
TCCATTCGGGAGGCAGACGCCGTGCCCTCTATGGATTGATCGGCTGCCAGCTCGGTCTTGACAGGTGGGCAGCCATAAAA
CCCGCGACGGCTTCGACCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MVFDHAPQARLMPVVDVKDGSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLCMFDADERMIICNGNYINIFC
LDAKLVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYIDQAKPSTYEETLSDGRIINISHRPLALGGWVSIYEDITEQ
RRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYNVTAADFPLGTTHRDALEKLLEIGIYQQIDVDSEV
AKTEACLVVAKMHSAYRYLTDGRTVLVTRQPMSGGGWVVTFDDVTERRRTEERMIHLAHHDTLTGLPNRSMFRERLDLAL
EDAAAPPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAERLQRCLHNETDVVARFGGDEFVVMQFNSKGIADAEKLAKRI
VEAIAKQFRDKSRDMHIGISLGIAVFPQDGRDADTLLKNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAAL
PRQEFDLDFQPIMNIASGEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWALRKACAAAASWPPGLRIAVNV
SAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDESKAVLKTLRQLRDLGIRIALDDFGTGYSSLAYLRRFPVDK
IKIDRSFIRDMGNRDTAAIVRTIIGLGNELGIVVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKARALH
SQTG

Sequences:

>Translated_724_residues
MVFDHAPQARLMPVVDVKDGSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLCMFDADERMIICNGNYINIFC
LDAKLVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYIDQAKPSTYEETLSDGRIINISHRPLALGGWVSIYEDITEQ
RRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYNVTAADFPLGTTHRDALEKLLEIGIYQQIDVDSEV
AKTEACLVVAKMHSAYRYLTDGRTVLVTRQPMSGGGWVVTFDDVTERRRTEERMIHLAHHDTLTGLPNRSMFRERLDLAL
EDAAAPPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAERLQRCLHNETDVVARFGGDEFVVMQFNSKGIADAEKLAKRI
VEAIAKQFRDKSRDMHIGISLGIAVFPQDGRDADTLLKNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAAL
PRQEFDLDFQPIMNIASGEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWALRKACAAAASWPPGLRIAVNV
SAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDESKAVLKTLRQLRDLGIRIALDDFGTGYSSLAYLRRFPVDK
IKIDRSFIRDMGNRDTAAIVRTIIGLGNELGIVVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKARALH
SQTG
>Mature_724_residues
MVFDHAPQARLMPVVDVKDGSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLCMFDADERMIICNGNYINIFC
LDAKLVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYIDQAKPSTYEETLSDGRIINISHRPLALGGWVSIYEDITEQ
RRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYNVTAADFPLGTTHRDALEKLLEIGIYQQIDVDSEV
AKTEACLVVAKMHSAYRYLTDGRTVLVTRQPMSGGGWVVTFDDVTERRRTEERMIHLAHHDTLTGLPNRSMFRERLDLAL
EDAAAPPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAERLQRCLHNETDVVARFGGDEFVVMQFNSKGIADAEKLAKRI
VEAIAKQFRDKSRDMHIGISLGIAVFPQDGRDADTLLKNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAAL
PRQEFDLDFQPIMNIASGEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWALRKACAAAASWPPGLRIAVNV
SAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDESKAVLKTLRQLRDLGIRIALDDFGTGYSSLAYLRRFPVDK
IKIDRSFIRDMGNRDTAAIVRTIIGLGNELGIVVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKARALH
SQTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=440, Percent_Identity=38.6363636363636, Blast_Score=297, Evalue=1e-81,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=32.4074074074074, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI226510982, Length=411, Percent_Identity=29.9270072992701, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=35.4838709677419, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=35.6, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081845, Length=234, Percent_Identity=36.3247863247863, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=36.1344537815126, Blast_Score=142, Evalue=1e-34,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=37.5, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=34.6491228070175, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1790496, Length=231, Percent_Identity=31.1688311688312, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1788381, Length=447, Percent_Identity=27.7404921700224, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=481, Percent_Identity=28.0665280665281, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=199, Percent_Identity=34.1708542713568, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=38.5057471264368, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=35.3260869565217, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=34.1614906832298, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=32.0652173913043, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=32.967032967033, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=37.888198757764, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=32.9192546583851, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=30.9090909090909, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=31.25, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1789650, Length=410, Percent_Identity=20.2439024390244, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1787410, Length=247, Percent_Identity=28.3400809716599, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 80639; Mature: 80639

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFDHAPQARLMPVVDVKDGSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLC
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
MFDADERMIICNGNYINIFCLDAKLVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYI
EEECCCEEEEEECCEEEEEEECCHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
DQAKPSTYEETLSDGRIINISHRPLALGGWVSIYEDITEQRRAEQDLKEQHRRFDAALAN
CCCCCCCHHHHHCCCCEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSQGLLMYDADGKMIVRNRRFLELYNVTAADFPLGTTHRDALEKLLEIGIYQQIDVDSEV
CCCCEEEECCCCCEEEECCCEEEEEECEECCCCCCCCHHHHHHHHHHCCCCEECCCCHHH
AKTEACLVVAKMHSAYRYLTDGRTVLVTRQPMSGGGWVVTFDDVTERRRTEERMIHLAHH
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHEEHHHC
DTLTGLPNRSMFRERLDLALEDAAAPPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAER
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHH
LQRCLHNETDVVARFGGDEFVVMQFNSKGIADAEKLAKRIVEAIAKQFRDKSRDMHIGIS
HHHHHCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
LGIAVFPQDGRDADTLLKNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAAL
EEEEEECCCCCCHHHHHHCCCHHHHEEHHCCCHHHHHHHHHHHHHHHHHHHHEECHHHCC
PRQEFDLDFQPIMNIASGEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWAL
CCHHCCCCHHHHHHHCCCCEECHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEECCHHHH
RKACAAAASWPPGLRIAVNVSAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDE
HHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCC
SKAVLKTLRQLRDLGIRIALDDFGTGYSSLAYLRRFPVDKIKIDRSFIRDMGNRDTAAIV
CHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCHHEEECHHHHHCCCCCHHHHHH
RTIIGLGNELGIVVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKARALH
HHHHHCCCCCEEEEEECCCCCEEEEEEHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
SQTG
CCCC
>Mature Secondary Structure
MVFDHAPQARLMPVVDVKDGSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLC
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
MFDADERMIICNGNYINIFCLDAKLVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYI
EEECCCEEEEEECCEEEEEEECCHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
DQAKPSTYEETLSDGRIINISHRPLALGGWVSIYEDITEQRRAEQDLKEQHRRFDAALAN
CCCCCCCHHHHHCCCCEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSQGLLMYDADGKMIVRNRRFLELYNVTAADFPLGTTHRDALEKLLEIGIYQQIDVDSEV
CCCCEEEECCCCCEEEECCCEEEEEECEECCCCCCCCHHHHHHHHHHCCCCEECCCCHHH
AKTEACLVVAKMHSAYRYLTDGRTVLVTRQPMSGGGWVVTFDDVTERRRTEERMIHLAHH
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHEEHHHC
DTLTGLPNRSMFRERLDLALEDAAAPPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAER
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHH
LQRCLHNETDVVARFGGDEFVVMQFNSKGIADAEKLAKRIVEAIAKQFRDKSRDMHIGIS
HHHHHCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
LGIAVFPQDGRDADTLLKNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAAL
EEEEEECCCCCCHHHHHHCCCHHHHEEHHCCCHHHHHHHHHHHHHHHHHHHHEECHHHCC
PRQEFDLDFQPIMNIASGEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWAL
CCHHCCCCHHHHHHHCCCCEECHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEECCHHHH
RKACAAAASWPPGLRIAVNVSAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDE
HHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCC
SKAVLKTLRQLRDLGIRIALDDFGTGYSSLAYLRRFPVDKIKIDRSFIRDMGNRDTAAIV
CHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCHHEEECHHHHHCCCCCHHHHHH
RTIIGLGNELGIVVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKARALH
HHHHHCCCCCEEEEEECCCCCEEEEEEHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
SQTG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]