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The map label for this gene is ymdB [C]

Identifier: 13476415

GI number: 13476415

Start: 6401919

End: 6402449

Strand: Reverse

Name: ymdB [C]

Synonym: mll7730

Alternate gene names: 13476415

Gene position: 6402449-6401919 (Counterclockwise)

Preceding gene: 13476416

Following gene: 13476414

Centisome position: 90.99

GC content: 61.96

Gene sequence:

>531_bases
GTGAGCAAGGCGCTGGACAGGATCCGCATCCACACCGGCGACATCACGAAGCTGGATGTTGACGCCATCGTCAATGCCGC
CAACACCTTGCTTCTCGGCGGCGGTGGGGTCGATGGCGCCATCCATCGCGCCGCCGGCCGCGAGCTCGAGGTCGAATGCC
GGATGCTGAATGGATGCAAGGTCGGCGACGCCAAGATCACCAAGGGCTACAAACTGCCGGCTCGACATATCATCCACACG
GTCGGGCCGGTCTGGCAGGGCGGCGGCAAGGGCGAAGCCGAGCTACTGGCCTCCTGCTATCGCAGTTCGCTGGAACTTGC
GGCCGCCAATGATTGCCGTTCGGTGGCGTTTCCGGCGATCTCGACCGGCGTTTACCGCTATCCCAAGGATGAGGCGACCG
GGATCGCTGTCGGCACGGTCAGCATGGTCATCGAAGAGAAAGCCATGCCTGAAACCGTCATTTTCTGCTGCTTCGACGAG
CAAACGGCGCAACTATACCTACGAGCCGTTGCTGCACTCCGGAAAGGTTGA

Upstream 100 bases:

>100_bases
ATCGATCCGGCGAAGACGCGCGAAGTGCTGGCGCTCAGCCTGTCCGCGTCGCTCAACGCCGAAATCGAGGACACGCGCTT
CGGCGTGTTCAGGATGTGAG

Downstream 100 bases:

>100_bases
ACTGTATATGGACCAACCGATTCATCAGCACATGCAAACTCGAATCCCCGACAACGAACTGGCGGCGAGGAAAAATATTC
GCTACTGCTTGTCCCGCACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSKALDRIRIHTGDITKLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECRMLNGCKVGDAKITKGYKLPARHIIHT
VGPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAISTGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDE
QTAQLYLRAVAALRKG

Sequences:

>Translated_176_residues
MSKALDRIRIHTGDITKLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECRMLNGCKVGDAKITKGYKLPARHIIHT
VGPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAISTGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDE
QTAQLYLRAVAALRKG
>Mature_175_residues
SKALDRIRIHTGDITKLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECRMLNGCKVGDAKITKGYKLPARHIIHTV
GPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAISTGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDEQ
TAQLYLRAVAALRKG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=170, Percent_Identity=51.1764705882353, Blast_Score=167, Evalue=6e-42,
Organism=Homo sapiens, GI13569840, Length=163, Percent_Identity=52.760736196319, Blast_Score=158, Evalue=2e-39,
Organism=Homo sapiens, GI207450721, Length=155, Percent_Identity=38.7096774193548, Blast_Score=100, Evalue=7e-22,
Organism=Homo sapiens, GI8923143, Length=155, Percent_Identity=38.7096774193548, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI154813199, Length=146, Percent_Identity=39.041095890411, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=32.183908045977, Blast_Score=87, Evalue=5e-18,
Organism=Homo sapiens, GI93141018, Length=179, Percent_Identity=29.0502793296089, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI93141020, Length=179, Percent_Identity=29.0502793296089, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI4758496, Length=179, Percent_Identity=29.0502793296089, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI226371718, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371716, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371714, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371712, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371710, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371706, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=57.8313253012048, Blast_Score=176, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17538214, Length=176, Percent_Identity=48.2954545454545, Blast_Score=145, Evalue=9e-36,
Organism=Drosophila melanogaster, GI24586353, Length=153, Percent_Identity=34.640522875817, Blast_Score=87, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y7730_RHILO (Q985D2)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_107985.1
- ProteinModelPortal:   Q985D2
- SMR:   Q985D2
- GeneID:   1230640
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll7730
- NMPDR:   fig|266835.1.peg.6086
- HOGENOM:   HBG682503
- OMA:   ARHVIHT
- ProtClustDB:   CLSK506854
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 18719; Mature: 18588

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKALDRIRIHTGDITKLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECRMLNGCK
CCCCCCEEEEECCCCEEEHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEEEEECCCE
VGDAKITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAI
ECCCCCCCCCCCCHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCEEECCCCCHHHCCHH
STGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDEQTAQLYLRAVAALRKG
HCCEEECCCCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKALDRIRIHTGDITKLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECRMLNGCK
CCCCCEEEEECCCCEEEHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEEEEECCCE
VGDAKITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAI
ECCCCCCCCCCCCHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCEEECCCCCHHHCCHH
STGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDEQTAQLYLRAVAALRKG
HCCEEECCCCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968