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The map label for this gene is cycH [H]

Identifier: 13476384

GI number: 13476384

Start: 6363053

End: 6364192

Strand: Direct

Name: cycH [H]

Synonym: mlr7688

Alternate gene names: 13476384

Gene position: 6363053-6364192 (Clockwise)

Preceding gene: 13476383

Following gene: 13476385

Centisome position: 90.43

GC content: 68.07

Gene sequence:

>1140_bases
ATGCTGTTCTGGGTCATAGCCGCGATACTGACGCTCGGCGCGAGCCTGGCGGTGCTGCTGCCGCTGGCCGCGGGATCCAA
GAGCGCGTCTTCGAGCGGCGATCACGATCTGGAAGTCTATCGCGACCAGCTGTCCGAGCTTGACCGCGATGCCGGGCGCG
GCTTGATCCAGCCGGCGGAAGCGGCCGAGGCGCGCGCCGAAATCGCGCGCCGCATCCTTCGCCTCGACAATGCCGATACA
GCCGGCAAGGCATCGGCCAGGCAGGCCTCGGTCACGGCACGGCTTGTCGCGACCGTCGCCGTGCTGGCTGTGCCGCTGGT
CAGCTGGGGCGTTTACAGCCAGATCGGCTCGCCTGACCTTCCGGCGCAGCCGCTCAGCCAACGGCTGGCCAAGAACCCGG
CCGACAGTTCGGTCGACGAATTGGTTGCACGCGCCGAGGCCCACCTTGCCGCCAACCCGTCCGACGGCAGGGGATGGGAC
GTGCTCGCCCCGGTCTATCTGCGCATGCAGCGCTTCTCCGACGCGGTCGCTGCGTATCGCAATGCCATCCGCCTCGACGG
CGACAGCGCTGTTCGCCAGGCCGGCCTCGGCGAGGCAATCGCCGGTGCGGCGGGCGGCATCGTTTCCGCCGATGCCCAGG
ATGCCTTCGAGGCGGCGCTGAAGCTCGATCCCGCCAATGCAAAAGCCAACTTCTACCTGGCCATGGCCCTGGCGCAGGAG
GGACGCAGCAAGGAAGCGGCCACGGCCTGGCAGGCGATGCTGGGCACTTTGCCGCCGGATTCGCCATGGCGCAGTGCCGT
TGAACAGGCGCTGGCCAAATCCGCCAGCCCCGAAGTCGCTTCCAGCACGGCGGCGAAAGGCCCCGATACCGCGGATGTCG
ACGCGGCATCCTCCCTGTCGCCGCAGGATCGCGAAGCCATGATCAACACCATGGTCGCCGGCCTCGACGAAAAACTGCGG
CAAAATCCGCGTGACCCGGAAGGATGGATGCGGCTCGTTCGTTCCTACGTCGTGCTGGGCAAGGCCGATCAGGCGCGCGA
GGCGCTCGGTCGCGCCATCGCCGTCTTTGGCGCGGACAGCGACGAAGCCAAGAAATTCACCGCCTTCGCCGCCTCGCTCG
GCCTGACGGCGACGGAGTAG

Upstream 100 bases:

>100_bases
TCCGGTTGATGTCGATCAAGGACGTCAGGCGCGCTGACCGTCAAAGCGTCGCAGGATGCCTGTGTTGGCAGGGCAGGGCT
CTGTCGTTATTGGAAGAACC

Downstream 100 bases:

>100_bases
ACCTGGATATGACGCGCAAGCAGAAACGACTGTCGGTCATTGTCGGCGGATTGGCTTTCCTTGGTGCCGCCACCGGGCTG
ACCTTCTACGCGCTCGGCCA

Product: cytochrome c-type biogenesis protein cycH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLFWVIAAILTLGASLAVLLPLAAGSKSASSSGDHDLEVYRDQLSELDRDAGRGLIQPAEAAEARAEIARRILRLDNADT
AGKASARQASVTARLVATVAVLAVPLVSWGVYSQIGSPDLPAQPLSQRLAKNPADSSVDELVARAEAHLAANPSDGRGWD
VLAPVYLRMQRFSDAVAAYRNAIRLDGDSAVRQAGLGEAIAGAAGGIVSADAQDAFEAALKLDPANAKANFYLAMALAQE
GRSKEAATAWQAMLGTLPPDSPWRSAVEQALAKSASPEVASSTAAKGPDTADVDAASSLSPQDREAMINTMVAGLDEKLR
QNPRDPEGWMRLVRSYVVLGKADQAREALGRAIAVFGADSDEAKKFTAFAASLGLTATE

Sequences:

>Translated_379_residues
MLFWVIAAILTLGASLAVLLPLAAGSKSASSSGDHDLEVYRDQLSELDRDAGRGLIQPAEAAEARAEIARRILRLDNADT
AGKASARQASVTARLVATVAVLAVPLVSWGVYSQIGSPDLPAQPLSQRLAKNPADSSVDELVARAEAHLAANPSDGRGWD
VLAPVYLRMQRFSDAVAAYRNAIRLDGDSAVRQAGLGEAIAGAAGGIVSADAQDAFEAALKLDPANAKANFYLAMALAQE
GRSKEAATAWQAMLGTLPPDSPWRSAVEQALAKSASPEVASSTAAKGPDTADVDAASSLSPQDREAMINTMVAGLDEKLR
QNPRDPEGWMRLVRSYVVLGKADQAREALGRAIAVFGADSDEAKKFTAFAASLGLTATE
>Mature_379_residues
MLFWVIAAILTLGASLAVLLPLAAGSKSASSSGDHDLEVYRDQLSELDRDAGRGLIQPAEAAEARAEIARRILRLDNADT
AGKASARQASVTARLVATVAVLAVPLVSWGVYSQIGSPDLPAQPLSQRLAKNPADSSVDELVARAEAHLAANPSDGRGWD
VLAPVYLRMQRFSDAVAAYRNAIRLDGDSAVRQAGLGEAIAGAAGGIVSADAQDAFEAALKLDPANAKANFYLAMALAQE
GRSKEAATAWQAMLGTLPPDSPWRSAVEQALAKSASPEVASSTAAKGPDTADVDAASSLSPQDREAMINTMVAGLDEKLR
QNPRDPEGWMRLVRSYVVLGKADQAREALGRAIAVFGADSDEAKKFTAFAASLGLTATE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39557; Mature: 39557

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFWVIAAILTLGASLAVLLPLAAGSKSASSSGDHDLEVYRDQLSELDRDAGRGLIQPAE
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
AAEARAEIARRILRLDNADTAGKASARQASVTARLVATVAVLAVPLVSWGVYSQIGSPDL
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAQPLSQRLAKNPADSSVDELVARAEAHLAANPSDGRGWDVLAPVYLRMQRFSDAVAAYR
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NAIRLDGDSAVRQAGLGEAIAGAAGGIVSADAQDAFEAALKLDPANAKANFYLAMALAQE
HHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
GRSKEAATAWQAMLGTLPPDSPWRSAVEQALAKSASPEVASSTAAKGPDTADVDAASSLS
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCC
PQDREAMINTMVAGLDEKLRQNPRDPEGWMRLVRSYVVLGKADQAREALGRAIAVFGADS
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCC
DEAKKFTAFAASLGLTATE
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLFWVIAAILTLGASLAVLLPLAAGSKSASSSGDHDLEVYRDQLSELDRDAGRGLIQPAE
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
AAEARAEIARRILRLDNADTAGKASARQASVTARLVATVAVLAVPLVSWGVYSQIGSPDL
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAQPLSQRLAKNPADSSVDELVARAEAHLAANPSDGRGWDVLAPVYLRMQRFSDAVAAYR
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NAIRLDGDSAVRQAGLGEAIAGAAGGIVSADAQDAFEAALKLDPANAKANFYLAMALAQE
HHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
GRSKEAATAWQAMLGTLPPDSPWRSAVEQALAKSASPEVASSTAAKGPDTADVDAASSLS
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCC
PQDREAMINTMVAGLDEKLRQNPRDPEGWMRLVRSYVVLGKADQAREALGRAIAVFGADS
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCC
DEAKKFTAFAASLGLTATE
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]