Click here to switch to the map view.

The map label for this gene is degT [H]

Identifier: 13476295

GI number: 13476295

Start: 6263229

End: 6264371

Strand: Reverse

Name: degT [H]

Synonym: mll7579

Alternate gene names: 13476295

Gene position: 6264371-6263229 (Counterclockwise)

Preceding gene: 13476296

Following gene: 13476291

Centisome position: 89.03

GC content: 63.34

Gene sequence:

>1143_bases
ATGCAGTTCATCGATCTTGGCGCACAGCGCGAACGCATCCGCGACCGACTGAAGGCCGCGATCGACCGTGTCGTCGACGA
AGGCCGCTATATCCTGGGACCGCAGGTCGCCGAATTCGAAAACAAGCTTGCGGCCTATGTCGGCACCAAACATGTGGTGG
CCTGCGCCAACGGCACCGATGCGCTGCTGCTGCCGCTGTTTGCCGCCGGGATCGGCCCGGGCGACGCGGTGTTCGTGCCG
AGCTTCACTTTCGCCGCCACCGCAGAAGTGGTGGCGCTGGCCAAGGCGGAACCTGTCTTCGTCGATGTCGATCCGGTGAC
CTACAACGTCGACATCGCCAGCCTCGAGGCGGCCATCGCCATGATCAAGAAGGAAGGCCGGCTGAAGCCGAAGGCGATCA
TCCCGGTCGACCTGTTCGGTCTCGCCGCCGATTACGATGCGATCATGGCGATCGCCAACCGCGAAGGGCTGTTGGTGATC
GAGGACGCCGCCCAGTCCATGGGTGGGTCGCTTGACGGCAAGATGTGCGGTGCGTTCGGCCATGTCGGCTCGACCAGCTT
CTATCCCGCCAAGCCGCTTGGCTGCTATGGCGACGGTGGCGCGATGTTCACCAACGACGACGAGATGGCCGACAAGCTGC
GTTCCTTTGCCTTCCACGGCAAGGGCGAGACGCAATACGACAACATCCGCGTCGGCATCAATTCGCGGCTCGACACGCTG
CAGGCGGCGATCCTCATCGAAAAACTCGCCATTCTCGAAGACGAGATGGTGGCACGCCAGGTGGTGGCAAACCGCTATGC
CGAGGGACTTGGCGATGTCGTGACAGCGGCCCGTAACCTCGACGGCAGCCGTTCGGCCTGGGCGCAGTACGCCATCGAGA
CGCCCAAGCGCGATGGCCTGAAGGCGCATCTGAGCGAAAAGGGCATTCCGTCCGTCATCTACTACGTCAAGCCGCTGCAC
GCGCAGGTCGCCTACAGCGACTACCCACGCACGCCGACCGGTCTTGCCGTCTCGGAGGAGCTGCCGAAGCGCATCCTGTG
CCTGCCGATGCATCCCTATCTCAGCGAAGCCGACCAGGACCGGATCATCGAGACGATCCGCAACTATATCGGCTCGAACT
CGGCGCAGGCAGCAGCCGAGTAA

Upstream 100 bases:

>100_bases
GCGGCTCTGGCTGTCCGGCTTTCTCGGCAAGCACAACTCTGGTACCAGCGGGCCGTTATTTGGCTAAACCGCCCGGTTAA
AAATCGTTTTTGAGGCTGAC

Downstream 100 bases:

>100_bases
TCGGCACCCGCTCTCAGGCGGGGATTGCCCCTGCCCTGCCGCTGGCGATGAAATGCGGGTTGGCGAAATCCTCGTCGTCG
GCCTGGTCGCGTTTGCCGTA

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MQFIDLGAQRERIRDRLKAAIDRVVDEGRYILGPQVAEFENKLAAYVGTKHVVACANGTDALLLPLFAAGIGPGDAVFVP
SFTFAATAEVVALAKAEPVFVDVDPVTYNVDIASLEAAIAMIKKEGRLKPKAIIPVDLFGLAADYDAIMAIANREGLLVI
EDAAQSMGGSLDGKMCGAFGHVGSTSFYPAKPLGCYGDGGAMFTNDDEMADKLRSFAFHGKGETQYDNIRVGINSRLDTL
QAAILIEKLAILEDEMVARQVVANRYAEGLGDVVTAARNLDGSRSAWAQYAIETPKRDGLKAHLSEKGIPSVIYYVKPLH
AQVAYSDYPRTPTGLAVSEELPKRILCLPMHPYLSEADQDRIIETIRNYIGSNSAQAAAE

Sequences:

>Translated_380_residues
MQFIDLGAQRERIRDRLKAAIDRVVDEGRYILGPQVAEFENKLAAYVGTKHVVACANGTDALLLPLFAAGIGPGDAVFVP
SFTFAATAEVVALAKAEPVFVDVDPVTYNVDIASLEAAIAMIKKEGRLKPKAIIPVDLFGLAADYDAIMAIANREGLLVI
EDAAQSMGGSLDGKMCGAFGHVGSTSFYPAKPLGCYGDGGAMFTNDDEMADKLRSFAFHGKGETQYDNIRVGINSRLDTL
QAAILIEKLAILEDEMVARQVVANRYAEGLGDVVTAARNLDGSRSAWAQYAIETPKRDGLKAHLSEKGIPSVIYYVKPLH
AQVAYSDYPRTPTGLAVSEELPKRILCLPMHPYLSEADQDRIIETIRNYIGSNSAQAAAE
>Mature_380_residues
MQFIDLGAQRERIRDRLKAAIDRVVDEGRYILGPQVAEFENKLAAYVGTKHVVACANGTDALLLPLFAAGIGPGDAVFVP
SFTFAATAEVVALAKAEPVFVDVDPVTYNVDIASLEAAIAMIKKEGRLKPKAIIPVDLFGLAADYDAIMAIANREGLLVI
EDAAQSMGGSLDGKMCGAFGHVGSTSFYPAKPLGCYGDGGAMFTNDDEMADKLRSFAFHGKGETQYDNIRVGINSRLDTL
QAAILIEKLAILEDEMVARQVVANRYAEGLGDVVTAARNLDGSRSAWAQYAIETPKRDGLKAHLSEKGIPSVIYYVKPLH
AQVAYSDYPRTPTGLAVSEELPKRILCLPMHPYLSEADQDRIIETIRNYIGSNSAQAAAE

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=374, Percent_Identity=31.8181818181818, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI2367285, Length=348, Percent_Identity=30.1724137931034, Blast_Score=131, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40928; Mature: 40928

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIDLGAQRERIRDRLKAAIDRVVDEGRYILGPQVAEFENKLAAYVGTKHVVACANGTD
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
ALLLPLFAAGIGPGDAVFVPSFTFAATAEVVALAKAEPVFVDVDPVTYNVDIASLEAAIA
HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCEEEEEEHHHHHHHHH
MIKKEGRLKPKAIIPVDLFGLAADYDAIMAIANREGLLVIEDAAQSMGGSLDGKMCGAFG
HHHHCCCCCCCEECCCHHHHHHCCHHHHHEEECCCCEEEEHHHHHHCCCCCCCCHHHHHC
HVGSTSFYPAKPLGCYGDGGAMFTNDDEMADKLRSFAFHGKGETQYDNIRVGINSRLDTL
CCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHH
QAAILIEKLAILEDEMVARQVVANRYAEGLGDVVTAARNLDGSRSAWAQYAIETPKRDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
KAHLSEKGIPSVIYYVKPLHAQVAYSDYPRTPTGLAVSEELPKRILCLPMHPYLSEADQD
HHHHHCCCCCEEEEEECHHHHEEEECCCCCCCCCCCHHHHCCCCEEEEECCHHHCCCCHH
RIIETIRNYIGSNSAQAAAE
HHHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure
MQFIDLGAQRERIRDRLKAAIDRVVDEGRYILGPQVAEFENKLAAYVGTKHVVACANGTD
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
ALLLPLFAAGIGPGDAVFVPSFTFAATAEVVALAKAEPVFVDVDPVTYNVDIASLEAAIA
HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCEEEEEEHHHHHHHHH
MIKKEGRLKPKAIIPVDLFGLAADYDAIMAIANREGLLVIEDAAQSMGGSLDGKMCGAFG
HHHHCCCCCCCEECCCHHHHHHCCHHHHHEEECCCCEEEEHHHHHHCCCCCCCCHHHHHC
HVGSTSFYPAKPLGCYGDGGAMFTNDDEMADKLRSFAFHGKGETQYDNIRVGINSRLDTL
CCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHH
QAAILIEKLAILEDEMVARQVVANRYAEGLGDVVTAARNLDGSRSAWAQYAIETPKRDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
KAHLSEKGIPSVIYYVKPLHAQVAYSDYPRTPTGLAVSEELPKRILCLPMHPYLSEADQD
HHHHHCCCCCEEEEEECHHHHEEEECCCCCCCCCCCHHHHCCCCEEEEECCHHHCCCCHH
RIIETIRNYIGSNSAQAAAE
HHHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]