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The map label for this gene is yddU [C]

Identifier: 13476242

GI number: 13476242

Start: 6198427

End: 6200091

Strand: Reverse

Name: yddU [C]

Synonym: mll7513

Alternate gene names: 13476242

Gene position: 6200091-6198427 (Counterclockwise)

Preceding gene: 13476243

Following gene: 13476240

Centisome position: 88.12

GC content: 64.86

Gene sequence:

>1665_bases
GTGGCCGGGTCGGGCGACACGGTGTGGGATTGGGACGTTCTGCGCGACCGCGTCGTCACCAAGCCTGATGTCAGCATCCA
GCTCGGCCTGGCGCCCAACAGCCTTGGTGGTGCCGCGCGCAACTGGCTGCCGGTGCTGCATGCCGACGACCGCGACACGT
TCCGCACGACGCTCGACGTGGTGCTGGAGCACCGGCGCGGCCGGGTGGCGCAGAATTTCCGCCTGCGCGGCGCCGACGGG
CACTATCACTGGTTCGCCTTGCGGGCGCGGCCAGTCATCGGATCGGACGGCGAGGTCATCCGCTGCGTCGGCACCATGGT
CGACGTCACCGAGCAGAAGAAGTCAGAGGAGCGGCTGCTGCACGACGCCGTGCACGACAATTTGACCGGCCTGCCAAACC
GCGAACTGTTCATGAACCGGCTGGAAGCGATCATCTCGATCGCCCGCACCGAAGAGAAGGTGCGCCCGACCGTCTTCGTC
ATCGACATAGACCGCTTCAAGCAGGTCAATGACGGGCTCGGCATCTCGGCCGGCGACACCATCCTGCTGACCATCGCTCG
GCGCCTGCACCGGCTGTTGAAGCCGAAGGATTCGCTGTCGCGCTTTGCCGGCGACCAGTTCGCGCTGATGCTTTTGTCCG
AACAGGACCCCGCCCGCATCGCCGGTGTGGCGGACGCCATCAAGCATGCGATCAACAACCCGATCACCTTCGCCAAGCGC
GAGATCGTGCTGACCGCCTCGATCGGCCTGATCACCTGGACATCAGCGCAGACTTCGGCCGAGGACATGGTCAAGGACGC
CGAACTTGCCATGCACCAGGCCAAGCGTTTCGGCGGCGACAGGATCGAGCCGTTCCGCCCGGCTTTCCGCACCGTCGGCA
CCGACCGGCTGCAGTTCGAATCCGATTTGCGGCGCGCCATCGAGCGGCGCGAATTCACCCTTGCCTACCAGCCGATCGTG
CGGCTGGAGGACGGCAGCGTCGCCGGCTTCGAAGCCTTGCTGCGCTGGGACCATCCGCGCCGCGGCATGATCCCGCCGGC
GGATTTCATTCCGGTCGCCGAAAGCTGCGGGCTGATCGTGCAGCTCGGGCTGTTCGCCATGCAGCAGGCCGCCGAGGACC
TGGCCGGATGGCAAAAGCAGATCGGCGACGCGCCGCTGTCGGTATCGGTCAATCTGTCCAGCCGCCAGCTCATCCGTCGC
GACCTGGTCAGCGATGTCCGCTCGGTCATCGCGCGGGCCAATCTGAAGCCGCGCTGCTTCCGGCTCGAACTGACCGAGTC
GCTGGTGATGGACAATCCCGAACAGACCGCGCATGTGCTGACCAAGCTGAAGCAGCTCGGCATCGGCCTGTCGCTGGACG
ATTTCGGTACCGGCTATTCCTCGCTCGCCTACCTGACGCGCTTCCCGTTCGACACGATCAAGATCGACAAGAGTTTTGTC
GACGACAACACGCCCAAGCGCGCCGTGCTGCTCAAATCCATGGTCAACATGGCGCATGAGCTCGGCCTGTCGGTGGTCGC
CGAGGGCATTTCGGACGAACGCGATGCGCTGGAACTGCGCCAGATGGGCTGCGAATATGTGCAGAGCTTCATGTTCGGCG
CGCCAATGCCGGGCGATCAGGTGCTGAAGACGTTGAAGGAACAGTATCCGCTGACGCAGGCTTAG

Upstream 100 bases:

>100_bases
GATCATCCTGTTGATCGGCTTCACCGTCATGCAGCATGCCTTTGCCGGCGGCGCGCTGCATCAGGGGCTGTTCTCCGACC
TCGAACGCCAGGCGCTGGCG

Downstream 100 bases:

>100_bases
AGGCTGCGTCGGCGTGATAGGTCAGGCGTGTCCGGCGGCCAGGCTGAGATGCGCCAGATCGATGCCGATCGAGGCGAGGA
TACGATCGTATTTGCGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MAGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDVVLEHRRGRVAQNFRLRGADG
HYHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLLHDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFV
IDIDRFKQVNDGLGISAGDTILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKR
EIVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIERREFTLAYQPIV
RLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRR
DLVSDVRSVIARANLKPRCFRLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFV
DDNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQYPLTQA

Sequences:

>Translated_554_residues
MAGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDVVLEHRRGRVAQNFRLRGADG
HYHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLLHDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFV
IDIDRFKQVNDGLGISAGDTILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKR
EIVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIERREFTLAYQPIV
RLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRR
DLVSDVRSVIARANLKPRCFRLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFV
DDNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQYPLTQA
>Mature_553_residues
AGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDVVLEHRRGRVAQNFRLRGADGH
YHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLLHDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFVI
DIDRFKQVNDGLGISAGDTILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKRE
IVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIERREFTLAYQPIVR
LEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRD
LVSDVRSVIARANLKPRCFRLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFVD
DNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQYPLTQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=443, Percent_Identity=33.6343115124154, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI1787541, Length=447, Percent_Identity=33.5570469798658, Blast_Score=244, Evalue=7e-66,
Organism=Escherichia coli, GI226510982, Length=441, Percent_Identity=28.1179138321995, Blast_Score=181, Evalue=9e-47,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=36.9294605809129, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=33.6, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=34.1666666666667, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=31.7829457364341, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=33.8645418326693, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=30.672268907563, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082096, Length=457, Percent_Identity=23.6323851203501, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=28.4, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=262, Percent_Identity=27.4809160305344, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788381, Length=421, Percent_Identity=26.8408551068884, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=225, Percent_Identity=31.1111111111111, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=240, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=27.810650887574, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=27.2251308900524, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787410, Length=149, Percent_Identity=28.1879194630872, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=27.683615819209, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787802, Length=135, Percent_Identity=27.4074074074074, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 61884; Mature: 61753

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDV
CCCCCCCEEEHHHHHHHCCCCCCCEEEEECCCCCCCCCHHCCEEEEECCCCHHHHHHHHH
VLEHRRGRVAQNFRLRGADGHYHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLL
HHHHHCCCHHHCCEEECCCCCEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
HDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDT
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCCCCH
ILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKR
HHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
EIVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFE
EEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHH
SDLRRAIERREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIV
HHHHHHHHHHHHEEEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHH
QLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCF
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEE
RLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFV
EEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCCCCEEECHHHC
DDNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VLKTLKEQYPLTQA
HHHHHHHHCCCCCC
>Mature Secondary Structure 
AGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDV
CCCCCCEEEHHHHHHHCCCCCCCEEEEECCCCCCCCCHHCCEEEEECCCCHHHHHHHHH
VLEHRRGRVAQNFRLRGADGHYHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLL
HHHHHCCCHHHCCEEECCCCCEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
HDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDT
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCCCCH
ILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKR
HHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
EIVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFE
EEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHH
SDLRRAIERREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIV
HHHHHHHHHHHHEEEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHH
QLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCF
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEE
RLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFV
EEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCCCCEEECHHHC
DDNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VLKTLKEQYPLTQA
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]