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The map label for this gene is yqxC [H]

Identifier: 13476217

GI number: 13476217

Start: 6176533

End: 6177297

Strand: Direct

Name: yqxC [H]

Synonym: mlr7477

Alternate gene names: 13476217

Gene position: 6176533-6177297 (Clockwise)

Preceding gene: 13476215

Following gene: 13476218

Centisome position: 87.78

GC content: 66.67

Gene sequence:

>765_bases
ATGAACTCGCCTCTGCCAGCCAGCACCCGCCAGCGGCTCGACGACCTGCTCGTCCAGCGCGGCCTGTTTGCCAGCCGTTC
GCGTGCCCGCGACGCGGTTGAGCGCGGCACGGTGACGGTTGACGGGGTCATGGCCCGCAAGCCCGGTCAGAACGTTTCGC
CGCAATGCCTTGTTGCCATCGATGATCCGGCGCAGGGCTATGTCTCGCGCGCGGCGCTGAAGCTCATCGGCGGGCTCGAT
CACTTCAGCCTCGACCCAGCCGGCCGCGAGGCACTCGACATCGGCGCTTCGACCGGCGGCTTCACCCAGGTGCTGCTGGA
GCGTGGCGCATCCCATGTCATCGCGATCGATGTCGGGCACGGCCAGATGCATCCCGATGTCGGCAAGGACCCGCGCGTGA
CGGTCGTCGAAGGGTTGAATGCCCGCGATCTCACCGCCGCGGATCTTGCCGGCCGCAATCCAGATTTCATCGTCTCCGAC
GTCAGCTTCATCTCGCTGAGACTGGCGCTGCCGCCGGCGCTTGCCCTCGCTAAGCCTGGTGCTGCCGCGGTCTTTCTGGT
CAAGCCGCAATTCGAGGCGGGTCGCGAAGCGATCGGCAAGGGCGGCCTGTTGAAGGACCCCTTCGATGCCGCCCGCGTGG
CCGGCCTGCTGCAGGATTGGCTGGATGCAGTTCCCGGCTGGCGTTCGCTCGGCCTGCATCTGTCGCCGATCGAAGGCGGC
GACGGCAATCGCGAATTCCTGCTTGGTGGGATCAAGGATCGATGA

Upstream 100 bases:

>100_bases
AGGCCGCGGAGCGGCTTGATGCATTCGATTGCGTGCGGCGATGTTCTTCGTTCCGTCCCAATGTCCTTGCCTTCGCTGCC
GGCTTTCGCCATGAAGGCAG

Downstream 100 bases:

>100_bases
GCGCGCGCTTCACCGTAAAAAAGCTTGGCGCCCAGGGCGACGGCATTGCCGAGACCGAAAGCGGTGACCTGTTCATCCCC
TTCACGCTGCCCGGCGAGAG

Product: hemolysin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNSPLPASTRQRLDDLLVQRGLFASRSRARDAVERGTVTVDGVMARKPGQNVSPQCLVAIDDPAQGYVSRAALKLIGGLD
HFSLDPAGREALDIGASTGGFTQVLLERGASHVIAIDVGHGQMHPDVGKDPRVTVVEGLNARDLTAADLAGRNPDFIVSD
VSFISLRLALPPALALAKPGAAAVFLVKPQFEAGREAIGKGGLLKDPFDAARVAGLLQDWLDAVPGWRSLGLHLSPIEGG
DGNREFLLGGIKDR

Sequences:

>Translated_254_residues
MNSPLPASTRQRLDDLLVQRGLFASRSRARDAVERGTVTVDGVMARKPGQNVSPQCLVAIDDPAQGYVSRAALKLIGGLD
HFSLDPAGREALDIGASTGGFTQVLLERGASHVIAIDVGHGQMHPDVGKDPRVTVVEGLNARDLTAADLAGRNPDFIVSD
VSFISLRLALPPALALAKPGAAAVFLVKPQFEAGREAIGKGGLLKDPFDAARVAGLLQDWLDAVPGWRSLGLHLSPIEGG
DGNREFLLGGIKDR
>Mature_254_residues
MNSPLPASTRQRLDDLLVQRGLFASRSRARDAVERGTVTVDGVMARKPGQNVSPQCLVAIDDPAQGYVSRAALKLIGGLD
HFSLDPAGREALDIGASTGGFTQVLLERGASHVIAIDVGHGQMHPDVGKDPRVTVVEGLNARDLTAADLAGRNPDFIVSD
VSFISLRLALPPALALAKPGAAAVFLVKPQFEAGREAIGKGGLLKDPFDAARVAGLLQDWLDAVPGWRSLGLHLSPIEGG
DGNREFLLGGIKDR

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26729; Mature: 26729

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPLPASTRQRLDDLLVQRGLFASRSRARDAVERGTVTVDGVMARKPGQNVSPQCLVAI
CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEE
DDPAQGYVSRAALKLIGGLDHFSLDPAGREALDIGASTGGFTQVLLERGASHVIAIDVGH
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCCCHHHHHHHHCCCCEEEEEECCC
GQMHPDVGKDPRVTVVEGLNARDLTAADLAGRNPDFIVSDVSFISLRLALPPALALAKPG
CCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCEEEECHHEEEEEECCCCHHHHCCCC
AAAVFLVKPQFEAGREAIGKGGLLKDPFDAARVAGLLQDWLDAVPGWRSLGLHLSPIEGG
CEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCC
DGNREFLLGGIKDR
CCCCEEEECCCCCC
>Mature Secondary Structure
MNSPLPASTRQRLDDLLVQRGLFASRSRARDAVERGTVTVDGVMARKPGQNVSPQCLVAI
CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEE
DDPAQGYVSRAALKLIGGLDHFSLDPAGREALDIGASTGGFTQVLLERGASHVIAIDVGH
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCCCHHHHHHHHCCCCEEEEEECCC
GQMHPDVGKDPRVTVVEGLNARDLTAADLAGRNPDFIVSDVSFISLRLALPPALALAKPG
CCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCEEEECHHEEEEEECCCCHHHHCCCC
AAAVFLVKPQFEAGREAIGKGGLLKDPFDAARVAGLLQDWLDAVPGWRSLGLHLSPIEGG
CEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCC
DGNREFLLGGIKDR
CCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]