Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 13476050

GI number: 13476050

Start: 6001236

End: 6002159

Strand: Direct

Name: ycjO [C]

Synonym: mlr7264

Alternate gene names: 13476050

Gene position: 6001236-6002159 (Clockwise)

Preceding gene: 13476049

Following gene: 13476051

Centisome position: 85.29

GC content: 60.5

Gene sequence:

>924_bases
ATGACTGCGGTGGTATCGCAAAGGCCCAAGCCATCCGGCTTCAGGATCAGCAAGAAGGTGCTGCCCTATGTGCTCAGCCT
GCCGGCCTTGCTCGTCTGCATCGGCATCCTGATCCCGTTCTTGACCTCGGTCGTCTATTCCTTCCAGCGCTACCGGCTAA
GCCAGCCCTGGGCGCGGCAGTTCAACTGGGGCGACAACTACATCTCCTTCTTCACCGATCCGAAATTCTGGAACACGCTC
AAGGTGTCGCTGCTCTATGCCGGCACCACCGTCGTGCTGGAACTACTTCTCGGCCTCGCCATCGCCATGCTGCTGCAGAA
GCGCTCCACACTGAACAATTTCATCTCGATCATGCTGTTGATGCCGCTAATGACGGCGCCGGCGCTCGCCGCCCTGATGT
GGAAGCTGATGACCAATCCCGGCTTTGGCGTCTTGAGCTATCTCGCCAGCCTGATCGGATTGCAGGATTTCCGCTGGGCC
TCGTCGCCGTCGACGGCGCTGTTCACCGTCGTGCTCGTCGACATCTGGGTCTACACGCCCTTCATCATGATCCTGCTGCT
CGCCGGCCTGCGCAGCCTGCCGACGCAGCCCTTCGAAGCGGCCGCGCTCGATGGCGTGCCGCGAAGCTTCGTCTTCTTCC
GCATCACACTGCCGATGCTGACGCCCTACATCCTGACGGCGACTTTGTTCCGGCTGCTCGATTCCATCCAGCAGTTCGAT
ATCATCTATGCGATGACCCAAGGCGGGCCGGGCGACACGCTGACCGTCTTCCAGGTCGAGGCCTATCTCAACTTCTTCCA
GTCGACCAATGTCGGCCGCTCGGCGGCTCTGATGATCATCCTGTGGGCGATCACCTATTTCCTCTCCAACATCTTCATCA
AGAACTGGCTGCGGCTGCGCGAACGCGCCCGTGGCCAGGCATAG

Upstream 100 bases:

>100_bases
CGATGCGGTGCCGGAAGGTGACCGCTATTTCGCCCGACCGGTCGCCTTGCTCCCTTGGGCGGCCGGCAGGGCGAAGCGAC
AGCGATAACGGAGCAACTCG

Downstream 100 bases:

>100_bases
GAGGCCGGGATGGAACACACCTCGTTTCTCGAGCGCATCCTGCGCGGTGTTGCACTGACGCTGGTGGTGATCTTCTTCAT
GTTCCCGATCGTCTGGATCT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTAVVSQRPKPSGFRISKKVLPYVLSLPALLVCIGILIPFLTSVVYSFQRYRLSQPWARQFNWGDNYISFFTDPKFWNTL
KVSLLYAGTTVVLELLLGLAIAMLLQKRSTLNNFISIMLLMPLMTAPALAALMWKLMTNPGFGVLSYLASLIGLQDFRWA
SSPSTALFTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALMIILWAITYFLSNIFIKNWLRLRERARGQA

Sequences:

>Translated_307_residues
MTAVVSQRPKPSGFRISKKVLPYVLSLPALLVCIGILIPFLTSVVYSFQRYRLSQPWARQFNWGDNYISFFTDPKFWNTL
KVSLLYAGTTVVLELLLGLAIAMLLQKRSTLNNFISIMLLMPLMTAPALAALMWKLMTNPGFGVLSYLASLIGLQDFRWA
SSPSTALFTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALMIILWAITYFLSNIFIKNWLRLRERARGQA
>Mature_306_residues
TAVVSQRPKPSGFRISKKVLPYVLSLPALLVCIGILIPFLTSVVYSFQRYRLSQPWARQFNWGDNYISFFTDPKFWNTLK
VSLLYAGTTVVLELLLGLAIAMLLQKRSTLNNFISIMLLMPLMTAPALAALMWKLMTNPGFGVLSYLASLIGLQDFRWAS
SPSTALFTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFDI
IYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALMIILWAITYFLSNIFIKNWLRLRERARGQA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=27.8884462151394, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789861, Length=287, Percent_Identity=30.6620209059233, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790465, Length=213, Percent_Identity=28.169014084507, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34654; Mature: 34523

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVVSQRPKPSGFRISKKVLPYVLSLPALLVCIGILIPFLTSVVYSFQRYRLSQPWARQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FNWGDNYISFFTDPKFWNTLKVSLLYAGTTVVLELLLGLAIAMLLQKRSTLNNFISIMLL
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPLMTAPALAALMWKLMTNPGFGVLSYLASLIGLQDFRWASSPSTALFTVVLVDIWVYTP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHHHH
FIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
HHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALMIILWAITYFLSNIFIKNWLRLR
HHEEEECCCCCCEEHEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERARGQA
HHHCCCC
>Mature Secondary Structure 
TAVVSQRPKPSGFRISKKVLPYVLSLPALLVCIGILIPFLTSVVYSFQRYRLSQPWARQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FNWGDNYISFFTDPKFWNTLKVSLLYAGTTVVLELLLGLAIAMLLQKRSTLNNFISIMLL
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPLMTAPALAALMWKLMTNPGFGVLSYLASLIGLQDFRWASSPSTALFTVVLVDIWVYTP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHHHH
FIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
HHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALMIILWAITYFLSNIFIKNWLRLR
HHEEEECCCCCCEEHEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERARGQA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]