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The map label for this gene is yfhH [H]

Identifier: 13476042

GI number: 13476042

Start: 5991678

End: 5992538

Strand: Direct

Name: yfhH [H]

Synonym: mlr7253

Alternate gene names: 13476042

Gene position: 5991678-5992538 (Clockwise)

Preceding gene: 13476032

Following gene: 13476045

Centisome position: 85.16

GC content: 63.41

Gene sequence:

>861_bases
ATGTCCGTTCTAAAAAAGATCAATGCGAAGCTCGACGGCATGGCGCCCGGCGATCGCGAGATCGGCCAGTACATCGTCGA
CAATCCCGACGAGATGCTGCGCCTGTCGACGGCAGCGCTTGCCGCCCAGATCGGGCGCAGTCAGTCAAGTGTCGTCAAGT
TTAGCCAGAAGCTCGGCTATGCAAGCTATCAGGAACTCAAGCTCGCCGTCAGCGAGGCCAAGGCGCAGGACTGGCAGGTG
CCGGCCGGCGTCATCCATGGTTCGATCGAGGTGGGCGACACCTATCCGGTCATCCTCAAGAAGCTAATCGGCAGCAAGCT
GCTGTCGATGCAGCAGACCGTCGCCGCCAACAGCGAGCGCATCATTTCCCGGACGCTGGAACTGCTCGATGGCGCGCGCC
GCATCCATCTGGTCGGCGTCGGCGCCTCCTCGCTGGTGGCGCGCGATTTCTCCTACAAGCTGATGAAGCTCGGCCGCAAC
GTGTTGCACGACAGCGACAGCCACATCCAGATGGCCAATGCCGCGACGCTGGGGCCAGGCGACGTGCTGTTCGCGCTGTC
CTATTCCGGCGCCAGCATCGAAACCTTGCGCATCGCCGAGCTCGCCGCCAAGCGCGGCACGACGGTGATCGCCGTCACCG
GCCTGCACGACAATCCGCTGAGCCGTGTCGCCGACATCCGCCTCTACACCATCGCCGATGAGGAGCGCGCGCGCTCGTCA
TCCATCACTGCGCGTGACGCGCAGCTGACGCTGACCGATCTGTTGTTCATCCTTTTGCTGCAGAAGCAGCCGGACGCCAA
CGACTATGTCCACAACAGCGAGGCGGCGGTCTCGGTGCTGAAGGCCGAGCGGTCCTCGTAA

Upstream 100 bases:

>100_bases
CTCGAACCCGGCCGATCCGAGAATTAATTCTGCGTTCTTGGCTGTCAATCGAAATTGGAATATTTTATTCCTCCGAGCAT
CGAAGCGTTCCAGAGGGTTC

Downstream 100 bases:

>100_bases
GGTCTCAGACGCTTTCGAGATAGGTCTCGATCTCGAAATCGCTGACATTGAGCGCGAAGGTGTTCAACTCCTGGCGTTTG
CAGGCGACGAAGGAGTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSVLKKINAKLDGMAPGDREIGQYIVDNPDEMLRLSTAALAAQIGRSQSSVVKFSQKLGYASYQELKLAVSEAKAQDWQV
PAGVIHGSIEVGDTYPVILKKLIGSKLLSMQQTVAANSERIISRTLELLDGARRIHLVGVGASSLVARDFSYKLMKLGRN
VLHDSDSHIQMANAATLGPGDVLFALSYSGASIETLRIAELAAKRGTTVIAVTGLHDNPLSRVADIRLYTIADEERARSS
SITARDAQLTLTDLLFILLLQKQPDANDYVHNSEAAVSVLKAERSS

Sequences:

>Translated_286_residues
MSVLKKINAKLDGMAPGDREIGQYIVDNPDEMLRLSTAALAAQIGRSQSSVVKFSQKLGYASYQELKLAVSEAKAQDWQV
PAGVIHGSIEVGDTYPVILKKLIGSKLLSMQQTVAANSERIISRTLELLDGARRIHLVGVGASSLVARDFSYKLMKLGRN
VLHDSDSHIQMANAATLGPGDVLFALSYSGASIETLRIAELAAKRGTTVIAVTGLHDNPLSRVADIRLYTIADEERARSS
SITARDAQLTLTDLLFILLLQKQPDANDYVHNSEAAVSVLKAERSS
>Mature_285_residues
SVLKKINAKLDGMAPGDREIGQYIVDNPDEMLRLSTAALAAQIGRSQSSVVKFSQKLGYASYQELKLAVSEAKAQDWQVP
AGVIHGSIEVGDTYPVILKKLIGSKLLSMQQTVAANSERIISRTLELLDGARRIHLVGVGASSLVARDFSYKLMKLGRNV
LHDSDSHIQMANAATLGPGDVLFALSYSGASIETLRIAELAAKRGTTVIAVTGLHDNPLSRVADIRLYTIADEERARSSS
ITARDAQLTLTDLLFILLLQKQPDANDYVHNSEAAVSVLKAERSS

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=281, Percent_Identity=40.9252669039146, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1788767, Length=264, Percent_Identity=39.3939393939394, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI1788159, Length=255, Percent_Identity=24.3137254901961, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082369, Length=252, Percent_Identity=24.2063492063492, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30884; Mature: 30753

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLKKINAKLDGMAPGDREIGQYIVDNPDEMLRLSTAALAAQIGRSQSSVVKFSQKLGY
CCHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
ASYQELKLAVSEAKAQDWQVPAGVIHGSIEVGDTYPVILKKLIGSKLLSMQQTVAANSER
CHHHHHHHHHHHHCCCCCCCCHHHEECCEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHH
IISRTLELLDGARRIHLVGVGASSLVARDFSYKLMKLGRNVLHDSDSHIQMANAATLGPG
HHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCHHHHCCCCCCEEECCCCCCCCC
DVLFALSYSGASIETLRIAELAAKRGTTVIAVTGLHDNPLSRVADIRLYTIADEERARSS
CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHEEEEEEECCHHHHHCC
SITARDAQLTLTDLLFILLLQKQPDANDYVHNSEAAVSVLKAERSS
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SVLKKINAKLDGMAPGDREIGQYIVDNPDEMLRLSTAALAAQIGRSQSSVVKFSQKLGY
CHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
ASYQELKLAVSEAKAQDWQVPAGVIHGSIEVGDTYPVILKKLIGSKLLSMQQTVAANSER
CHHHHHHHHHHHHCCCCCCCCHHHEECCEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHH
IISRTLELLDGARRIHLVGVGASSLVARDFSYKLMKLGRNVLHDSDSHIQMANAATLGPG
HHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCHHHHCCCCCCEEECCCCCCCCC
DVLFALSYSGASIETLRIAELAAKRGTTVIAVTGLHDNPLSRVADIRLYTIADEERARSS
CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHEEEEEEECCHHHHHCC
SITARDAQLTLTDLLFILLLQKQPDANDYVHNSEAAVSVLKAERSS
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1602968; 7984428 [H]