Click here to switch to the map view.

The map label for this gene is ydcV [H]

Identifier: 13475986

GI number: 13475986

Start: 5933554

End: 5934354

Strand: Reverse

Name: ydcV [H]

Synonym: mll7185

Alternate gene names: 13475986

Gene position: 5934354-5933554 (Counterclockwise)

Preceding gene: 13475987

Following gene: 13475984

Centisome position: 84.34

GC content: 63.8

Gene sequence:

>801_bases
ATGAACGACCTGCCCCGCCCCTCCACCATCTTCCTGGCCGCGATCACAACGCTGGTCGCGGTGCTGCTCTACAGCCCGCT
CTTCGTGCCGATCGTGTCGTCGTTCTTCACCATCTCGCACGGCGATGTCGACTGGTCGTCACCGACCCTCTCGACCTATT
GGGCTCTGGCCGAAAACCACGACATCCTGACTGCCCTGCGCACCACGCTGATCGTCGGCCTGTGCACCGTCGTGCTCTCG
GTGGTCAGCGGCACGCTGCTGGCGCTCTACTATCACGGCCGCCGCTCGGGACGCTCGATCTTGCAGTTCATCATCTTCCT
ACCGTTCCTGATGCCGCCGATCATCAGCGGCCTGGCTCTGCTGATCTTCTTCCGCGAGATCGGCCTCGAGCGTTCGCTGC
TAACGGTCGTCATCGGCCATACGGTCTTCGTGCTGGCGATCGTCTATCGCACCGTGCTGATGCGGCTGCAGTCGATGAGC
CGCACGCTGGTCGAAGCGTCCTACGATCTCGGCGCGACCGGCTGGCAGACCTTCTGGCGCATCATCCTGCCGAACCTGTC
GAGCGCCATGGTCGGCGGCGCCGTCCTGGCCTTCGCGCTGTCGTTCGACGAGACGATGATCACCATCCTGGTCACCGGCA
CGCAAAGCACGCTGCCGGTCCGGCTGTGGGCGATGATGCGGCTTGGCTTCTCGCCCGACATCAATGCGCTGGTCGCCTTG
ATCCTTATGTTCACCGTGCTGCTCTGCGTGCTTGCCGCCCGTTTTCTGATCCCCAGGCAGATGGCGACGGAGCGGAGCTG
A

Upstream 100 bases:

>100_bases
ACTGGCCGTTCGGCGCCGCACTGTCGGTAGCGCTGGCGATCGTGGTGATCTGCGCCATCCTCATCGGCGAACGGTTCGGG
CGCAGCCGGGGGACGTCGGT

Downstream 100 bases:

>100_bases
CTGCCGGCCTACAGGACGACATTTGTCATCGGGGGACGGCAGCTGGATCGAGGTCGAAGACACGTCCCGGATTAAGGATG
TTCTTCGGGTCGAGCGCCGT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNDLPRPSTIFLAAITTLVAVLLYSPLFVPIVSSFFTISHGDVDWSSPTLSTYWALAENHDILTALRTTLIVGLCTVVLS
VVSGTLLALYYHGRRSGRSILQFIIFLPFLMPPIISGLALLIFFREIGLERSLLTVVIGHTVFVLAIVYRTVLMRLQSMS
RTLVEASYDLGATGWQTFWRIILPNLSSAMVGGAVLAFALSFDETMITILVTGTQSTLPVRLWAMMRLGFSPDINALVAL
ILMFTVLLCVLAARFLIPRQMATERS

Sequences:

>Translated_266_residues
MNDLPRPSTIFLAAITTLVAVLLYSPLFVPIVSSFFTISHGDVDWSSPTLSTYWALAENHDILTALRTTLIVGLCTVVLS
VVSGTLLALYYHGRRSGRSILQFIIFLPFLMPPIISGLALLIFFREIGLERSLLTVVIGHTVFVLAIVYRTVLMRLQSMS
RTLVEASYDLGATGWQTFWRIILPNLSSAMVGGAVLAFALSFDETMITILVTGTQSTLPVRLWAMMRLGFSPDINALVAL
ILMFTVLLCVLAARFLIPRQMATERS
>Mature_266_residues
MNDLPRPSTIFLAAITTLVAVLLYSPLFVPIVSSFFTISHGDVDWSSPTLSTYWALAENHDILTALRTTLIVGLCTVVLS
VVSGTLLALYYHGRRSGRSILQFIIFLPFLMPPIISGLALLIFFREIGLERSLLTVVIGHTVFVLAIVYRTVLMRLQSMS
RTLVEASYDLGATGWQTFWRIILPNLSSAMVGGAVLAFALSFDETMITILVTGTQSTLPVRLWAMMRLGFSPDINALVAL
ILMFTVLLCVLAARFLIPRQMATERS

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=244, Percent_Identity=39.344262295082, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787368, Length=227, Percent_Identity=29.0748898678414, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787081, Length=251, Percent_Identity=33.0677290836653, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788764, Length=177, Percent_Identity=28.8135593220339, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082099, Length=169, Percent_Identity=29.585798816568, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29374; Mature: 29374

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLPRPSTIFLAAITTLVAVLLYSPLFVPIVSSFFTISHGDVDWSSPTLSTYWALAENH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
DILTALRTTLIVGLCTVVLSVVSGTLLALYYHGRRSGRSILQFIIFLPFLMPPIISGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LIFFREIGLERSLLTVVIGHTVFVLAIVYRTVLMRLQSMSRTLVEASYDLGATGWQTFWR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IILPNLSSAMVGGAVLAFALSFDETMITILVTGTQSTLPVRLWAMMRLGFSPDINALVAL
HHHCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHH
ILMFTVLLCVLAARFLIPRQMATERS
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDLPRPSTIFLAAITTLVAVLLYSPLFVPIVSSFFTISHGDVDWSSPTLSTYWALAENH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
DILTALRTTLIVGLCTVVLSVVSGTLLALYYHGRRSGRSILQFIIFLPFLMPPIISGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LIFFREIGLERSLLTVVIGHTVFVLAIVYRTVLMRLQSMSRTLVEASYDLGATGWQTFWR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IILPNLSSAMVGGAVLAFALSFDETMITILVTGTQSTLPVRLWAMMRLGFSPDINALVAL
HHHCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHH
ILMFTVLLCVLAARFLIPRQMATERS
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]