| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is yghA [C]
Identifier: 13475878
GI number: 13475878
Start: 5819331
End: 5820077
Strand: Direct
Name: yghA [C]
Synonym: mlr7057
Alternate gene names: 13475878
Gene position: 5819331-5820077 (Clockwise)
Preceding gene: 13475877
Following gene: 13475879
Centisome position: 82.71
GC content: 62.52
Gene sequence:
>747_bases ATGACTAAGCTTTCAGGAAAGACCGCTCTCGTCACAGGTGCCTCGCGTGGGATGGGGCGGTCCGCCGCGTTGGCGCTGGC ACGAATGGGCGCGCAGGTATTGATTCACTACAGCACCGGGTTGAAAGAGGCCGAAGCCGTCGTCGCCGAGATTCGCGAGG CCGGCGGACGTGCAGACTCGCTTGCCGCAGATCTGTCCGCGCCGGATGGGGCGCACAAGCTCGCGAAGCAGGTTCGATCT GTGATCGGCGACAGACTGGACATCCTTGTAGCCAACGCCGGAACCTCGAAGTCGGCGACCATTGAGCAAACTACGGTCGA GGATTTCGACAGGCTCTTCGCGGTCAACGTCCGCGCTCCGTTCTTCCTCGTCCAGCAGTTGCTGCCTATCATGGGCAAGG ACAGCAGCATCGTGCTGATCTCTTCGCTGGCAGCCCATGCGGCGGTAGGAACGCTCCCAGCCTATGCGGCGACCAAAGGT GCGATCGACACATTGGTGAAGCACTTCGCTGCAGTGCTCGGCGAACGCGGCATTCGTGTCAATGCTGTGGCGCCGGGTGT CGTCGGGACCGACATGTCAAGCTTCACCAAGACGGACGCAGGGCGTGACTTCACACTCGGCATTCAGGCGCTGAAACGTC TTGCCCAGCCGGACGATATCGGCGGTGTCGTCGCCTTCCTCGCCACTGACGACGCGCGCTGGATTAGCGGCGACATCGTC CGGGTCGACGGCGGCTCGAAGCTCTGA
Upstream 100 bases:
>100_bases TACCGAACCTATCCGCTAATCATCGTCCCCAACGCCGGTAGGGCGAATTCGCCGCCACGCGCTACCCCATACAACAGCTT CCGATCAAGGAGATAAGACC
Downstream 100 bases:
>100_bases TGCCGGCATTGGGAGTAAACTTGGATCGGCGCAGAGATAAACCTGAAGGAGCACACCATGAAACTTTGCCATTCAACGTC CTCGCCCAATTCGCGCCGCG
Product: putative oxidoreductase
Products: NA
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MTKLSGKTALVTGASRGMGRSAALALARMGAQVLIHYSTGLKEAEAVVAEIREAGGRADSLAADLSAPDGAHKLAKQVRS VIGDRLDILVANAGTSKSATIEQTTVEDFDRLFAVNVRAPFFLVQQLLPIMGKDSSIVLISSLAAHAAVGTLPAYAATKG AIDTLVKHFAAVLGERGIRVNAVAPGVVGTDMSSFTKTDAGRDFTLGIQALKRLAQPDDIGGVVAFLATDDARWISGDIV RVDGGSKL
Sequences:
>Translated_248_residues MTKLSGKTALVTGASRGMGRSAALALARMGAQVLIHYSTGLKEAEAVVAEIREAGGRADSLAADLSAPDGAHKLAKQVRS VIGDRLDILVANAGTSKSATIEQTTVEDFDRLFAVNVRAPFFLVQQLLPIMGKDSSIVLISSLAAHAAVGTLPAYAATKG AIDTLVKHFAAVLGERGIRVNAVAPGVVGTDMSSFTKTDAGRDFTLGIQALKRLAQPDDIGGVVAFLATDDARWISGDIV RVDGGSKL >Mature_247_residues TKLSGKTALVTGASRGMGRSAALALARMGAQVLIHYSTGLKEAEAVVAEIREAGGRADSLAADLSAPDGAHKLAKQVRSV IGDRLDILVANAGTSKSATIEQTTVEDFDRLFAVNVRAPFFLVQQLLPIMGKDSSIVLISSLAAHAAVGTLPAYAATKGA IDTLVKHFAAVLGERGIRVNAVAPGVVGTDMSSFTKTDAGRDFTLGIQALKRLAQPDDIGGVVAFLATDDARWISGDIVR VDGGSKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=31.1740890688259, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=31.4516129032258, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=31.5175097276265, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=33.739837398374, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=30.078125, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28.4, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=31.9796954314721, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI210032110, Length=213, Percent_Identity=28.6384976525822, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=30.5699481865285, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI40807363, Length=201, Percent_Identity=30.3482587064677, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=24.3137254901961, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI59889578, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=26.1224489795918, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI225579078, Length=264, Percent_Identity=29.9242424242424, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI32455239, Length=182, Percent_Identity=32.4175824175824, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI5031765, Length=182, Percent_Identity=32.4175824175824, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI209862901, Length=200, Percent_Identity=30, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI19923983, Length=200, Percent_Identity=30, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=24.1106719367589, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=27.8008298755187, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=32.994923857868, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=26.9076305220884, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=35.7429718875502, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=35.5102040816327, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=35.5212355212355, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=33.469387755102, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=31.4285714285714, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=33.0612244897959, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=32.8185328185328, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=31.4285714285714, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=30.0813008130081, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.8617886178862, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=26.9387755102041, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=30.5555555555556, Blast_Score=73, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=32.5396825396825, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=35.7429718875502, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=32.3308270676692, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=30.4347826086957, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193204405, Length=272, Percent_Identity=35.2941176470588, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=33.955223880597, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.0827067669173, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=29.4354838709677, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=32.9588014981273, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=30.4832713754647, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=30.9701492537313, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=31.4814814814815, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=30.7116104868914, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30.3703703703704, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17560220, Length=276, Percent_Identity=31.8840579710145, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=28.2258064516129, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.0861423220974, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17508895, Length=207, Percent_Identity=35.2657004830918, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=31.5985130111524, Blast_Score=90, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=32.4742268041237, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=30.6818181818182, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=28.1954887218045, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=27.5092936802974, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=31.3653136531365, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=28.3400809716599, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=27.1698113207547, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=30.5439330543933, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193203115, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=25.968992248062, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=27.0161290322581, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17532791, Length=157, Percent_Identity=35.031847133758, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI86565303, Length=219, Percent_Identity=31.5068493150685, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=24.5059288537549, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=28.2945736434109, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.979274611399, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=227, Percent_Identity=28.1938325991189, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=34.136546184739, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI28571526, Length=261, Percent_Identity=34.8659003831418, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=33.6032388663968, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=30.9803921568627, Blast_Score=103, Evalue=7e-23, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=30.4, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=30.6451612903226, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=30.5882352941176, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=28.2258064516129, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=30, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24640492, Length=209, Percent_Identity=25.8373205741627, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI221510726, Length=188, Percent_Identity=31.9148936170213, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358495, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI18859837, Length=244, Percent_Identity=29.9180327868852, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=28.643216080402, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580925, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=25.5905511811024, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25652; Mature: 25521
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLSGKTALVTGASRGMGRSAALALARMGAQVLIHYSTGLKEAEAVVAEIREAGGRADS CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHH LAADLSAPDGAHKLAKQVRSVIGDRLDILVANAGTSKSATIEQTTVEDFDRLFAVNVRAP HHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHEEEECCCCH FFLVQQLLPIMGKDSSIVLISSLAAHAAVGTLPAYAATKGAIDTLVKHFAAVLGERGIRV HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE NAVAPGVVGTDMSSFTKTDAGRDFTLGIQALKRLAQPDDIGGVVAFLATDDARWISGDIV EEECCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCEE RVDGGSKL EECCCCCC >Mature Secondary Structure TKLSGKTALVTGASRGMGRSAALALARMGAQVLIHYSTGLKEAEAVVAEIREAGGRADS CCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHH LAADLSAPDGAHKLAKQVRSVIGDRLDILVANAGTSKSATIEQTTVEDFDRLFAVNVRAP HHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHEEEECCCCH FFLVQQLLPIMGKDSSIVLISSLAAHAAVGTLPAYAATKGAIDTLVKHFAAVLGERGIRV HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE NAVAPGVVGTDMSSFTKTDAGRDFTLGIQALKRLAQPDDIGGVVAFLATDDARWISGDIV EEECCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCEE RVDGGSKL EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]