BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is yohF [C]

Identifier: 13475876

GI number: 13475876

Start: 5817988

End: 5818734

Strand: Direct

Name: yohF [C]

Synonym: mlr7055

Alternate gene names: 13475876

Gene position: 5817988-5818734 (Clockwise)

Preceding gene: 13475874

Following gene: 13475877

Centisome position: 82.69

GC content: 61.98

Gene sequence:

>747_bases
ATGAGCACTCCCGTTGTTTTGATTACCGGCGCGTTGACCGGCATCGGCCGCGAGACAGCAATCGCCTTCGCAAAAGAAGG
CTCTCGCCTCGTCATCGCGGGTCGCCACGAAGAGGCTGGACGGAAACTCGCAACCGAGCTGCAATCGTTTGGCGCGGAGG
TGGAATTCATCCGGGCTGATGTCCGGCACGACGACGAGGTGCGCGATCTCATCGATCGGGCGGTTGCCCGCTTCGGGCGC
CTCGACGTCGCCGTTAACAATGCCGGCACTGAAGGCAAGCCGGGCCCAGTAACCGAGCAGACGGCCGAAACCTACGCGGC
GACCTTCGACACCAACGTGCTGGGGACGCTGCTTAGTCTGAAACATGAGCTTCGGATCATGCTGACCCAGGGCGGCGGCA
GCATTGTCAACATCTCCTCGACCTACGGCCATGAGGGCGCGAAGGGCGCTTCGATCTACGCGGCAAGCAAGCATGCCGTC
GAAGGCTTAACCAAGTCCGCTGCCCTTGAAGCAGCGGCCTCGGGTGTTCGCGTGAACGCAGTCGCCCCCGGACCAACGAA
CACCGGCATGCTCGATCGCTTCACCGGTACTTCCGAAGTGAAGGCCTCCCTGGCCTTGACTGTGCCAATGGGACGCGTTG
GCCAGCCAAGCGAACTTGCCCGCGCAATCGTCTTTCTGGCCTCTAAAGAGGCATCGTTCATCACTGGGCACGTTCTGACG
GTGGACGGCGGAAAGACTGCGGGTTGA

Upstream 100 bases:

>100_bases
CCCACCTGGAGATCTACCAGACCCATTTCTCGTTCACGGAGCTCCGAGGGATTTGGCCCTTGAGCTGTCGTGGGCGGTCA
TACTTTCGAGGACTACAATC

Downstream 100 bases:

>100_bases
TTGCGACTGCGAGCGTTCTCGCGGCGTTTCGCGAACCATTCCTACGAATCGACAGAGGAGATGCGATCATGAGCGAGCAC
TTAAGCAGCAAGGCCGTTGT

Product: dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSTPVVLITGALTGIGRETAIAFAKEGSRLVIAGRHEEAGRKLATELQSFGAEVEFIRADVRHDDEVRDLIDRAVARFGR
LDVAVNNAGTEGKPGPVTEQTAETYAATFDTNVLGTLLSLKHELRIMLTQGGGSIVNISSTYGHEGAKGASIYAASKHAV
EGLTKSAALEAAASGVRVNAVAPGPTNTGMLDRFTGTSEVKASLALTVPMGRVGQPSELARAIVFLASKEASFITGHVLT
VDGGKTAG

Sequences:

>Translated_248_residues
MSTPVVLITGALTGIGRETAIAFAKEGSRLVIAGRHEEAGRKLATELQSFGAEVEFIRADVRHDDEVRDLIDRAVARFGR
LDVAVNNAGTEGKPGPVTEQTAETYAATFDTNVLGTLLSLKHELRIMLTQGGGSIVNISSTYGHEGAKGASIYAASKHAV
EGLTKSAALEAAASGVRVNAVAPGPTNTGMLDRFTGTSEVKASLALTVPMGRVGQPSELARAIVFLASKEASFITGHVLT
VDGGKTAG
>Mature_247_residues
STPVVLITGALTGIGRETAIAFAKEGSRLVIAGRHEEAGRKLATELQSFGAEVEFIRADVRHDDEVRDLIDRAVARFGRL
DVAVNNAGTEGKPGPVTEQTAETYAATFDTNVLGTLLSLKHELRIMLTQGGGSIVNISSTYGHEGAKGASIYAASKHAVE
GLTKSAALEAAASGVRVNAVAPGPTNTGMLDRFTGTSEVKASLALTVPMGRVGQPSELARAIVFLASKEASFITGHVLTV
DGGKTAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=38.961038961039, Blast_Score=141, Evalue=6e-34,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=36.3636363636364, Blast_Score=138, Evalue=4e-33,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=34.2412451361868, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=32.3770491803279, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=32.9268292682927, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI31542939, Length=199, Percent_Identity=36.6834170854271, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.8300395256917, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI4503301, Length=222, Percent_Identity=29.2792792792793, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=27.6422764227642, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=32.3770491803279, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=32.1138211382114, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=31.9066147859922, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI210032110, Length=239, Percent_Identity=28.0334728033473, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI223718074, Length=209, Percent_Identity=33.4928229665072, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI142976729, Length=190, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=27.0161290322581, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=34.6820809248555, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7657478, Length=244, Percent_Identity=30.7377049180328, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=30.9278350515464, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI209862901, Length=209, Percent_Identity=33.4928229665072, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI19923983, Length=209, Percent_Identity=33.4928229665072, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=31.0880829015544, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI157739938, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=28.1914893617021, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=29.2553191489362, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=29.8342541436464, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=25.2066115702479, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=29.9610894941634, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=37.8048780487805, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI87082100, Length=247, Percent_Identity=38.0566801619433, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=33.4710743801653, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082160, Length=240, Percent_Identity=32.0833333333333, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=31.9672131147541, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=35.4330708661417, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=33.1967213114754, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=34.0163934426229, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=32.7800829875519, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI2367175, Length=262, Percent_Identity=34.3511450381679, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787526, Length=247, Percent_Identity=28.7449392712551, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=32.7800829875519, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=28.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788891, Length=235, Percent_Identity=27.6595744680851, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=26.2548262548263, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=30.8457711442786, Blast_Score=71, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=37.0517928286853, Blast_Score=140, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=37.2, Blast_Score=138, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17560150, Length=254, Percent_Identity=34.6456692913386, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=34.7328244274809, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=35.2490421455939, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI72000259, Length=252, Percent_Identity=33.7301587301587, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=34.2307692307692, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=33.4586466165414, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17544670, Length=259, Percent_Identity=32.8185328185328, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=31.8007662835249, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=31.9391634980989, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=34.0996168582375, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=34.6007604562738, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=31.9391634980989, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=33.4586466165414, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=32.5581395348837, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17563726, Length=252, Percent_Identity=32.9365079365079, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=34.6774193548387, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=32.5670498084291, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=30.6201550387597, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=33.0578512396694, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=34.156378600823, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=28.6290322580645, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.4354838709677, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=32.520325203252, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17561272, Length=238, Percent_Identity=33.6134453781513, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=30.2788844621514, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=34.2105263157895, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=34.2105263157895, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17508651, Length=244, Percent_Identity=27.8688524590164, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=27.3684210526316, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=189, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=188, Percent_Identity=30.3191489361702, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=189, Percent_Identity=27.5132275132275, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=28.8617886178862, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=29.6747967479675, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=39.2857142857143, Blast_Score=143, Evalue=9e-35,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=38.7096774193548, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=38.7096774193548, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=37.5, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI21355319, Length=243, Percent_Identity=31.6872427983539, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=30.9917355371901, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17737361, Length=251, Percent_Identity=33.4661354581673, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=37.4501992031873, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=30.327868852459, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21358495, Length=240, Percent_Identity=26.25, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24580925, Length=207, Percent_Identity=30.9178743961353, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357673, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581726, Length=191, Percent_Identity=28.7958115183246, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24640492, Length=190, Percent_Identity=27.3684210526316, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859837, Length=188, Percent_Identity=28.1914893617021, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=29.5, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24584748, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663911, Length=222, Percent_Identity=27.9279279279279, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25670; Mature: 25539

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPVVLITGALTGIGRETAIAFAKEGSRLVIAGRHEEAGRKLATELQSFGAEVEFIRAD
CCCCEEEEEECCCCCCHHHEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEC
VRHDDEVRDLIDRAVARFGRLDVAVNNAGTEGKPGPVTEQTAETYAATFDTNVLGTLLSL
CCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
KHELRIMLTQGGGSIVNISSTYGHEGAKGASIYAASKHAVEGLTKSAALEAAASGVRVNA
HCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCEEEEE
VAPGPTNTGMLDRFTGTSEVKASLALTVPMGRVGQPSELARAIVFLASKEASFITGHVLT
ECCCCCCCCCEECCCCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEE
VDGGKTAG
ECCCCCCC
>Mature Secondary Structure 
STPVVLITGALTGIGRETAIAFAKEGSRLVIAGRHEEAGRKLATELQSFGAEVEFIRAD
CCCEEEEEECCCCCCHHHEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEC
VRHDDEVRDLIDRAVARFGRLDVAVNNAGTEGKPGPVTEQTAETYAATFDTNVLGTLLSL
CCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
KHELRIMLTQGGGSIVNISSTYGHEGAKGASIYAASKHAVEGLTKSAALEAAASGVRVNA
HCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCEEEEE
VAPGPTNTGMLDRFTGTSEVKASLALTVPMGRVGQPSELARAIVFLASKEASFITGHVLT
ECCCCCCCCCEECCCCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEE
VDGGKTAG
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]