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The map label for this gene is rbsB [H]

Identifier: 13475843

GI number: 13475843

Start: 5779178

End: 5780119

Strand: Reverse

Name: rbsB [H]

Synonym: mll7014

Alternate gene names: 13475843

Gene position: 5780119-5779178 (Counterclockwise)

Preceding gene: 13475844

Following gene: 13475842

Centisome position: 82.15

GC content: 62.1

Gene sequence:

>942_bases
ATGAAACTTACTCGCAGAATGACGCTTGCGGCTTTCGCCAGCGTATTGGCACTCGGCACGGCGGCGCCGGCCTTCGCGGC
CGACCTGATCGCGATCATCACCCCCTCACACGACAATCCGTTCTTCAAGGCGGAAGCCGTCGGCGCCGAGGCAAAGGCCA
AGGAGCTCGGCTACGAGGCGCTGGTGCTGGTGCATGACGACGACGCCAACAAGCAGTCGCAACTGATCGACACCGCGATC
GGCCGCGGCGCCAAGGCCATCATCCTCGACAATGCCGGCGCCGACGCCACCGTCGCTGCGGTGCAGAAGGCCAAGGACGC
CGGCATCCCCTCCTTCCTGATCGACCGCGAGATAAACGCCACCGGCGTCGCCGTGGCGCAAATCGTCTCCAACAACTACC
AGGGCGCCCAGCTCGGCGCGCAGGAATTCGTCAAGCTGATGGGCGAGAAGGGCAATTATGTCGAGTTGGTCGGCAAGGAA
TCCGACACCAATGCCGGCATCCGCTCCAAGGGCTATCACGACGTAATCGACGACTATCCAGACCTGAAGAAGGTGGCGCA
GCAGTCGGCCAACTGGAGCCAGACCGAGGCCTATTCCAAGATGGAATCGATTCTTCAGGCCAACCCCGACATCAAGGGCG
TGATCTCCGGCAACGACACGATGGCGATGGGCGCCTATGCGGCGCTCGCCGCGGCGAACCGCAAGGATGTCATCGTCGTC
GGCTTCGACGGCTCCAACGACGTGCGCGATTCCATCACATCAGGCGGCATCAAGGCGACGGTGCTGCAGCCCGCCTACGC
CCAGGCGCAGATGGCGGTCGAGCAGGCCAACAACTTCATCAAGAACAAGAAATCGCCAGAGAAGGAAAAGCAGCTGATGG
ACTGCGTGCTCGTCAATGGCGGCAATGCCGCCAAGCTGGAAACCTTCGCGCTGAAGAACTGA

Upstream 100 bases:

>100_bases
TGCTGATCGGAGCGGCGCGCCGCCGCACTGCCTAACGAATTCAAATGGAGACAGCGGCCTCGGCTGGTCGAGGCACGAGA
TTTTTCAATGGGAGGACTTC

Downstream 100 bases:

>100_bases
ACCGGCGAAACTCGAACAGCGGGGGGCGAACCAGGGGTTCGTCCCTCGCCTCCATTTCACCAGGATACTTTGACCTTCAT
GCTCAACAAGCCGATCTGGC

Product: ribose ABC transporter, periplasmic ribose-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKLTRRMTLAAFASVLALGTAAPAFAADLIAIITPSHDNPFFKAEAVGAEAKAKELGYEALVLVHDDDANKQSQLIDTAI
GRGAKAIILDNAGADATVAAVQKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLGAQEFVKLMGEKGNYVELVGKE
SDTNAGIRSKGYHDVIDDYPDLKKVAQQSANWSQTEAYSKMESILQANPDIKGVISGNDTMAMGAYAALAAANRKDVIVV
GFDGSNDVRDSITSGGIKATVLQPAYAQAQMAVEQANNFIKNKKSPEKEKQLMDCVLVNGGNAAKLETFALKN

Sequences:

>Translated_313_residues
MKLTRRMTLAAFASVLALGTAAPAFAADLIAIITPSHDNPFFKAEAVGAEAKAKELGYEALVLVHDDDANKQSQLIDTAI
GRGAKAIILDNAGADATVAAVQKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLGAQEFVKLMGEKGNYVELVGKE
SDTNAGIRSKGYHDVIDDYPDLKKVAQQSANWSQTEAYSKMESILQANPDIKGVISGNDTMAMGAYAALAAANRKDVIVV
GFDGSNDVRDSITSGGIKATVLQPAYAQAQMAVEQANNFIKNKKSPEKEKQLMDCVLVNGGNAAKLETFALKN
>Mature_313_residues
MKLTRRMTLAAFASVLALGTAAPAFAADLIAIITPSHDNPFFKAEAVGAEAKAKELGYEALVLVHDDDANKQSQLIDTAI
GRGAKAIILDNAGADATVAAVQKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLGAQEFVKLMGEKGNYVELVGKE
SDTNAGIRSKGYHDVIDDYPDLKKVAQQSANWSQTEAYSKMESILQANPDIKGVISGNDTMAMGAYAALAAANRKDVIVV
GFDGSNDVRDSITSGGIKATVLQPAYAQAQMAVEQANNFIKNKKSPEKEKQLMDCVLVNGGNAAKLETFALKN

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=278, Percent_Identity=31.6546762589928, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1790526, Length=301, Percent_Identity=29.2358803986711, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790674, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788473, Length=315, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33037; Mature: 33037

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTRRMTLAAFASVLALGTAAPAFAADLIAIITPSHDNPFFKAEAVGAEAKAKELGYEA
CCCHHHHHHHHHHHHHHHHCCCHHHHHCEEEEEECCCCCCCEEEHHCCCHHHHHHCCCEE
LVLVHDDDANKQSQLIDTAIGRGAKAIILDNAGADATVAAVQKAKDAGIPSFLIDREINA
EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCC
TGVAVAQIVSNNYQGAQLGAQEFVKLMGEKGNYVELVGKESDTNAGIRSKGYHDVIDDYP
HHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCH
DLKKVAQQSANWSQTEAYSKMESILQANPDIKGVISGNDTMAMGAYAALAAANRKDVIVV
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEE
GFDGSNDVRDSITSGGIKATVLQPAYAQAQMAVEQANNFIKNKKSPEKEKQLMDCVLVNG
EECCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEECC
GNAAKLETFALKN
CCCCEEEEEECCC
>Mature Secondary Structure
MKLTRRMTLAAFASVLALGTAAPAFAADLIAIITPSHDNPFFKAEAVGAEAKAKELGYEA
CCCHHHHHHHHHHHHHHHHCCCHHHHHCEEEEEECCCCCCCEEEHHCCCHHHHHHCCCEE
LVLVHDDDANKQSQLIDTAIGRGAKAIILDNAGADATVAAVQKAKDAGIPSFLIDREINA
EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCC
TGVAVAQIVSNNYQGAQLGAQEFVKLMGEKGNYVELVGKESDTNAGIRSKGYHDVIDDYP
HHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCH
DLKKVAQQSANWSQTEAYSKMESILQANPDIKGVISGNDTMAMGAYAALAAANRKDVIVV
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEE
GFDGSNDVRDSITSGGIKATVLQPAYAQAQMAVEQANNFIKNKKSPEKEKQLMDCVLVNG
EECCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEECC
GNAAKLETFALKN
CCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]