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The map label for this gene is rbsC [H]

Identifier: 13475840

GI number: 13475840

Start: 5775809

End: 5776807

Strand: Reverse

Name: rbsC [H]

Synonym: mll7011

Alternate gene names: 13475840

Gene position: 5776807-5775809 (Counterclockwise)

Preceding gene: 13475841

Following gene: 13475839

Centisome position: 82.1

GC content: 63.86

Gene sequence:

>999_bases
ATGAAGCTCAGGACCTTCATCGCGCTGATTGCCGTGCTGGTGTTCTTCTCCATCGCCGCCCCGAACTTCCTGTCCGCCGC
CAATCTGATCCTGATGGCCAAGCATGTGGCGCTCAACGCCTTCCTCGCCATGGGCATGACCTTCGTCATCATCACCGGCG
GCATCGACCTTTCGGTCGGCTCGATCGTCGGCCTGTGCGGCATGGTGGCCGGCTATCTCGTGCTCAACGGCATCGACCTG
CAATTCGGCTACACCATCTACTTCAACGTGGTGGAGATCGCATTGATCACCCTGGCGGTCGGCATTTTGATCGGCGCCGT
CAACGGACTGCTGATCACCCGGCTCAACGTCGCACCCTTCATCGCCACGCTCGGCGTCCTCTATGTGGCGCGCGGCCTGG
CGCTGCTGTCGTCTGACGGCCGCACCTTCCCCAATCTGGTCGGCAAGCCGGAACTCGGCACCACCGGCTTCGGCTTCCTC
GGCGCAGGCCGGCTCGTCGGCTTGCCCGTCTCGATCTGGATCCTGATCGTGGTGGCGCTGGGCGCGGCGTATCTCGCCCG
GTACACGCCGCTCGGCCGCCACATCTTCGCCGTCGGTGGAAACGAGCGCGCGGCGCGCATTTCGGGCGTACGCGTCAACA
TGGTCAAGATGTTCGTCTACATGTTCTCCGGCTTCTGCGCGGCGATCGTCGGCCTGATCATCTCGTCGGAGCTGATGGCC
TCGCATCCTGCAACAGGCGAGAGCTTCGAACTGAATGCCATCGCTGCGGCGGTGCTTGGAGGCACCTCGATGTCGGGCGG
CCGCGGCACGATCGGCGGCACCATCGTCGGCGCCTTCGTCATCGGCATCCTGTCGGATGGGCTGGTGATGATGGGCGTGA
GCTCCTTCTGGCAGATGGTGATCAAAGGCCTCGTCATCATCGTCGCCGTCGTCGTCGACCAGGCACAGCGCCGGCTTCAG
CAGCGTGTCACCCTGATGCAGATGGCAAAGGCGGGTTGA

Upstream 100 bases:

>100_bases
CACATCTTGCCCCAGAATTTGGAGAGCAACGCTGATGACTGACATTCCGGCCAGGGCGGCTCACGCATCGGCCTCCAGCG
GCTCGGCGTTGCTGACGCTG

Downstream 100 bases:

>100_bases
TCATGGCGAATTTGAACGGAGCGCTAATCGGCTGCGGCTTCTTCGCCGTCAACCAGATGCATGCCTGGCGCGACATAGCG
GGCGCCTCGATCGTCGCCAT

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKLRTFIALIAVLVFFSIAAPNFLSAANLILMAKHVALNAFLAMGMTFVIITGGIDLSVGSIVGLCGMVAGYLVLNGIDL
QFGYTIYFNVVEIALITLAVGILIGAVNGLLITRLNVAPFIATLGVLYVARGLALLSSDGRTFPNLVGKPELGTTGFGFL
GAGRLVGLPVSIWILIVVALGAAYLARYTPLGRHIFAVGGNERAARISGVRVNMVKMFVYMFSGFCAAIVGLIISSELMA
SHPATGESFELNAIAAAVLGGTSMSGGRGTIGGTIVGAFVIGILSDGLVMMGVSSFWQMVIKGLVIIVAVVVDQAQRRLQ
QRVTLMQMAKAG

Sequences:

>Translated_332_residues
MKLRTFIALIAVLVFFSIAAPNFLSAANLILMAKHVALNAFLAMGMTFVIITGGIDLSVGSIVGLCGMVAGYLVLNGIDL
QFGYTIYFNVVEIALITLAVGILIGAVNGLLITRLNVAPFIATLGVLYVARGLALLSSDGRTFPNLVGKPELGTTGFGFL
GAGRLVGLPVSIWILIVVALGAAYLARYTPLGRHIFAVGGNERAARISGVRVNMVKMFVYMFSGFCAAIVGLIISSELMA
SHPATGESFELNAIAAAVLGGTSMSGGRGTIGGTIVGAFVIGILSDGLVMMGVSSFWQMVIKGLVIIVAVVVDQAQRRLQ
QRVTLMQMAKAG
>Mature_332_residues
MKLRTFIALIAVLVFFSIAAPNFLSAANLILMAKHVALNAFLAMGMTFVIITGGIDLSVGSIVGLCGMVAGYLVLNGIDL
QFGYTIYFNVVEIALITLAVGILIGAVNGLLITRLNVAPFIATLGVLYVARGLALLSSDGRTFPNLVGKPELGTTGFGFL
GAGRLVGLPVSIWILIVVALGAAYLARYTPLGRHIFAVGGNERAARISGVRVNMVKMFVYMFSGFCAAIVGLIISSELMA
SHPATGESFELNAIAAAVLGGTSMSGGRGTIGGTIVGAFVIGILSDGLVMMGVSSFWQMVIKGLVIIVAVVVDQAQRRLQ
QRVTLMQMAKAG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=317, Percent_Identity=41.3249211356467, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1789992, Length=376, Percent_Identity=33.7765957446808, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1788896, Length=298, Percent_Identity=34.5637583892617, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1790524, Length=313, Percent_Identity=34.5047923322684, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=31.5960912052117, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=31.8936877076412, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=34.1614906832298, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787793, Length=301, Percent_Identity=33.8870431893688, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=37.109375, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=31.7460317460317, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34604; Mature: 34604

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRTFIALIAVLVFFSIAAPNFLSAANLILMAKHVALNAFLAMGMTFVIITGGIDLSVG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHH
SIVGLCGMVAGYLVLNGIDLQFGYTIYFNVVEIALITLAVGILIGAVNGLLITRLNVAPF
HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IATLGVLYVARGLALLSSDGRTFPNLVGKPELGTTGFGFLGAGRLVGLPVSIWILIVVAL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCHHHHHHHHHHHH
GAAYLARYTPLGRHIFAVGGNERAARISGVRVNMVKMFVYMFSGFCAAIVGLIISSELMA
HHHHHHHCCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHPATGESFELNAIAAAVLGGTSMSGGRGTIGGTIVGAFVIGILSDGLVMMGVSSFWQMV
CCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IKGLVIIVAVVVDQAQRRLQQRVTLMQMAKAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLRTFIALIAVLVFFSIAAPNFLSAANLILMAKHVALNAFLAMGMTFVIITGGIDLSVG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHH
SIVGLCGMVAGYLVLNGIDLQFGYTIYFNVVEIALITLAVGILIGAVNGLLITRLNVAPF
HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IATLGVLYVARGLALLSSDGRTFPNLVGKPELGTTGFGFLGAGRLVGLPVSIWILIVVAL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCHHHHHHHHHHHH
GAAYLARYTPLGRHIFAVGGNERAARISGVRVNMVKMFVYMFSGFCAAIVGLIISSELMA
HHHHHHHCCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHPATGESFELNAIAAAVLGGTSMSGGRGTIGGTIVGAFVIGILSDGLVMMGVSSFWQMV
CCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IKGLVIIVAVVVDQAQRRLQQRVTLMQMAKAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]