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The map label for this gene is rsmB [H]

Identifier: 13475779

GI number: 13475779

Start: 5708911

End: 5710200

Strand: Direct

Name: rsmB [H]

Synonym: mlr6944

Alternate gene names: 13475779

Gene position: 5708911-5710200 (Clockwise)

Preceding gene: 13475777

Following gene: 13475780

Centisome position: 81.14

GC content: 67.52

Gene sequence:

>1290_bases
ATGCGACTGGGCGGACGGCTGGCAGCGGCCATCGAAGTGCTGGAGGACATTGGCCGGCGTCACCGGCCGGTGGCCGATGC
GCTGAAGGATTGGGGCCTGTCACACCGCTTCGCCGGCGGCGGTGATCGCGCGGCGATCGGCAACATCGTCTACGACGCGC
TGCGCCACAAACGCTCCGCCGGATGGCTGCTCGGCGAAGACACGCCGCGCGCCGTCGGCTTCGGCGCATTGCTGCTCGAA
TGGGGCCACACGGCGCAGTCGCTCAACGACGCGCTCGACGGCGACAAGTTCGCGCCGCCGCTGCTCAGCGCCACCGAGCT
GCAGACGATCGCCGGTCGCGGGCTTGCCGACGCGCCGCTCGCGGTGCGCGCCGATATACCCGATTGGTGTGAACCGCTTT
TCGAACGGGCTTTTGGCGAGGCATGGGTCGGGGAGGGCGCGGCGCTGGCGACGCGCCCGCCGCTCGACATAAGGGTCAAC
ACGCTGCAAGCCGATCGCGCCAGGGTGCTCAAGGAACTGGCCGATACAGGGGCGCAAGCCGCGCGGATCGCGCCGCTCGG
CATCCGCATTCCGCCCATCGATGGCGACGGCAGACACCCGAACGTGCAAGCCGAGCCCGCCTTCCAGAAGGGCTGGTTCG
AGGTCCAGGACGAGGGCTCGCAAATAGCGGCGACACTTGCCGGTGCCGAGGCCGGCATGCAGGTGCTCGACTTTTGCGCC
GGCGCCGGCGGCAAGACGCTGGCACTGTCGGCTGCGATGGACAATCGCGGCCAGATATTTGCCCATGATGCCGAAAAGGC
GCGGCTGGCGCCAATCTTCGACCGCATCCGCCGCTCGGAAAACCGCAACGTCCAGGTCGTCACCAAGCCGGCCGAACTCG
CTCCGCTCTCCAATCACATGGACATCGTGCTGGTCGACGCGCCTTGCACCGGCAGCGGCACCTGGCGGCGCCGTCCCGAT
GCCAAATGGCGGCTGACGCAAAGGCAGCTCGATGCCCGCAAGGGCGAGCAGTCGGCGATCCTCGATGCGGCACAAGCCTA
TGTCAAACCCGGCGGCCTGCTGGTCTACATCACCTGCTCGGTATTCTCCGAGGAGAATGGCGAGCAGATCGCCACGTTCC
GCGACCGCGACAGCCGTTTTGTTCCAGTCGACCACCGTGCACTGTGGGACAGCCATTTTCCGGGCCACGAGGCGGCCGCG
CGGATCGGTTCTGCCGGCGATATCTCGCTGTCGCCATTGCTGAGCGGAACGGACGGGTTTTATTTCTGCGCGCTGCGCCG
GGCCAACTGA

Upstream 100 bases:

>100_bases
GATTTCAGGCGGCCTCTTCGTCGCGTGACGGAGCGGGGTTCAATCCGGACGCGAAAGGCTCTAAGAGCAGGCGATAAATC
TCGATTTGATGGAATGATCA

Downstream 100 bases:

>100_bases
GCCGGCCGGATCGCCAATGTCTCCACATGGCGGCCGACGGGCGAATTGTTGCAGTGCAGCAATTGCGATTGCCTGCCGCC
CATCCCTCTGCAATAAGCTT

Product: SUN-family protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MRLGGRLAAAIEVLEDIGRRHRPVADALKDWGLSHRFAGGGDRAAIGNIVYDALRHKRSAGWLLGEDTPRAVGFGALLLE
WGHTAQSLNDALDGDKFAPPLLSATELQTIAGRGLADAPLAVRADIPDWCEPLFERAFGEAWVGEGAALATRPPLDIRVN
TLQADRARVLKELADTGAQAARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAATLAGAEAGMQVLDFCA
GAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQVVTKPAELAPLSNHMDIVLVDAPCTGSGTWRRRPD
AKWRLTQRQLDARKGEQSAILDAAQAYVKPGGLLVYITCSVFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAA
RIGSAGDISLSPLLSGTDGFYFCALRRAN

Sequences:

>Translated_429_residues
MRLGGRLAAAIEVLEDIGRRHRPVADALKDWGLSHRFAGGGDRAAIGNIVYDALRHKRSAGWLLGEDTPRAVGFGALLLE
WGHTAQSLNDALDGDKFAPPLLSATELQTIAGRGLADAPLAVRADIPDWCEPLFERAFGEAWVGEGAALATRPPLDIRVN
TLQADRARVLKELADTGAQAARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAATLAGAEAGMQVLDFCA
GAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQVVTKPAELAPLSNHMDIVLVDAPCTGSGTWRRRPD
AKWRLTQRQLDARKGEQSAILDAAQAYVKPGGLLVYITCSVFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAA
RIGSAGDISLSPLLSGTDGFYFCALRRAN
>Mature_429_residues
MRLGGRLAAAIEVLEDIGRRHRPVADALKDWGLSHRFAGGGDRAAIGNIVYDALRHKRSAGWLLGEDTPRAVGFGALLLE
WGHTAQSLNDALDGDKFAPPLLSATELQTIAGRGLADAPLAVRADIPDWCEPLFERAFGEAWVGEGAALATRPPLDIRVN
TLQADRARVLKELADTGAQAARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAATLAGAEAGMQVLDFCA
GAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQVVTKPAELAPLSNHMDIVLVDAPCTGSGTWRRRPD
AKWRLTQRQLDARKGEQSAILDAAQAYVKPGGLLVYITCSVFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAA
RIGSAGDISLSPLLSGTDGFYFCALRRAN

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=239, Percent_Identity=28.8702928870293, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI76150623, Length=239, Percent_Identity=28.8702928870293, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI32698918, Length=181, Percent_Identity=25.9668508287293, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI8922322, Length=319, Percent_Identity=26.3322884012539, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI270288818, Length=319, Percent_Identity=26.3322884012539, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI270288816, Length=319, Percent_Identity=26.3322884012539, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI23199998, Length=244, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI2367212, Length=258, Percent_Identity=32.9457364341085, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081985, Length=279, Percent_Identity=29.3906810035842, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=293, Percent_Identity=29.3515358361775, Blast_Score=91, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6324268, Length=221, Percent_Identity=30.316742081448, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI22024126, Length=288, Percent_Identity=27.4305555555556, Blast_Score=86, Evalue=7e-17,
Organism=Drosophila melanogaster, GI21356513, Length=167, Percent_Identity=26.9461077844311, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24668781, Length=167, Percent_Identity=26.9461077844311, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 46275; Mature: 46275

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGGRLAAAIEVLEDIGRRHRPVADALKDWGLSHRFAGGGDRAAIGNIVYDALRHKRSA
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
GWLLGEDTPRAVGFGALLLEWGHTAQSLNDALDGDKFAPPLLSATELQTIAGRGLADAPL
CCEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCE
AVRADIPDWCEPLFERAFGEAWVGEGAALATRPPLDIRVNTLQADRARVLKELADTGAQA
EEECCCCHHHHHHHHHHHCCHHCCCCCEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCC
ARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAATLAGAEAGMQVLDFCA
EEEEECCEEECCCCCCCCCCCCCCCCCHHCCCEEEECCCCEEEEEHHCHHHHHHHHHHHH
GAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQVVTKPAELAPLSNHM
CCCCCEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCC
DIVLVDAPCTGSGTWRRRPDAKWRLTQRQLDARKGEQSAILDAAQAYVKPGGLLVYITCS
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEE
VFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAARIGSAGDISLSPLLSGTDGF
EECCCCCCEEEEEECCCCCEECCCHHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCCE
YFCALRRAN
EEEEEEECC
>Mature Secondary Structure
MRLGGRLAAAIEVLEDIGRRHRPVADALKDWGLSHRFAGGGDRAAIGNIVYDALRHKRSA
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
GWLLGEDTPRAVGFGALLLEWGHTAQSLNDALDGDKFAPPLLSATELQTIAGRGLADAPL
CCEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCE
AVRADIPDWCEPLFERAFGEAWVGEGAALATRPPLDIRVNTLQADRARVLKELADTGAQA
EEECCCCHHHHHHHHHHHCCHHCCCCCEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCC
ARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAATLAGAEAGMQVLDFCA
EEEEECCEEECCCCCCCCCCCCCCCCCHHCCCEEEECCCCEEEEEHHCHHHHHHHHHHHH
GAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQVVTKPAELAPLSNHM
CCCCCEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCC
DIVLVDAPCTGSGTWRRRPDAKWRLTQRQLDARKGEQSAILDAAQAYVKPGGLLVYITCS
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEE
VFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAARIGSAGDISLSPLLSGTDGF
EECCCCCCEEEEEECCCCCEECCCHHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCCE
YFCALRRAN
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]