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The map label for this gene is ygaK [H]

Identifier: 13475728

GI number: 13475728

Start: 5657151

End: 5658590

Strand: Direct

Name: ygaK [H]

Synonym: mlr6875

Alternate gene names: 13475728

Gene position: 5657151-5658590 (Clockwise)

Preceding gene: 13475726

Following gene: 13475741

Centisome position: 80.4

GC content: 63.4

Gene sequence:

>1440_bases
ATGAAAAGCATGAGCCTCACCACGCTTGATCGCGGCAAGACGACGGTCGACGCCGCAACCATCGAAACGCTTTCGGCACA
ATTGCGCGGCACACTGCTTCAGCAGGGAGATGCTGCCTACAACGAAGCCCGCACCGTGTGGAATGCCACGGTCGACCGGC
GGCCCGGGCTGATCGTGTGTTGCGTCGGCGCCTCCGACGTCATTCGTGCCGTGAATTTCGCCAGGGAAAACAGGCTTCTC
GTCTCCGTGCGCGGCGGCGGCCATAACATTGCCGGCAGCGCCGTCTGCGATGGCGGTCTGATGATCGATCTGTCGCCGAT
GAAGTCGGTGCGGGTCGATCCCGTCGCACGGCGGGCATGGGTTGGACCCGGCGCAACGCTCGCCGATGTCGACCGCGAAA
CGCAGGCCTTCGGGCTGGCGGTGCCGACCGGCATCAATTCGACCACCGGCATATCAGGGCTGACCCTGGGCGGTGGCTTT
GGCTGGATCACCCGCAAATTCGGCCTGACCATCGACAATCTTGTCTCCGCCGATGTGGTCACCGCCGACGGCAAGTTGCT
GCGCGCCAGCCAGACGGAAAATCCGGACCTGTTCTGGGCACTGCGTGGCGGCGGCGGCAATTTCGGCATTGTCACGGCAT
TCGAGTTTCAGCTCCACCAGATGGGTCCGCAGGTTCTGTCGGGGCTTGTCGTCCATCCCTTCGCCGATGCCGAGAAGGTG
CTGGAGGAGTATCGCAACGCGCTCGAAACAGCGCCCGACGAGCTGACCTGCTGGGTGGTCATGCGGCAAGCGCCGCCACT
GCCCTTCCTGCCGGCCGAGTGGCATGGCAAGGATGTTCTGGTGCTGGCCATGTGCTATTGCGGCGATCTCCAGGCAGGTG
AAAAGGCGACGAAGAAGCTTCGCGCCATCGGCTCGCCAATTGCCGATGTCGTCGGCCCCAACCCGTTCACCGGCTGGCAG
CAGGCATTCGACCCATTGCTCGCACCCGGCGCCCGCAACTACTGGAAGAGCCATGACTTCACCGAGCTTTCCGACAGGGC
AGCCGAGATCGTCACCGAAGCGATACGTGAGCTTCCTGGCCCGGAATGCGAGATATTCATCGGCCATGTTGGCGGTGCGG
CGGGCCGTGTGGCACAGAACGCGACGGCGTTTCCGCAACGCAGCTCGCACTTCGTCATGAATGTCCATGCCCGCTGGCGC
GATCCGGCAATGGACAGGGCCTGCATCGGTTGGGCGCGCGGCCTCTATGAGGCGGCCAAGCCCTATGCCGCCGGCACAGC
CTATGTGAACTTCATGCCTGAGGACGAGGTCGACCGGGTGGAAGCGGCCTATGGCGGCAATTACCAGAGGCTTCTGGAAA
TCAAGCAGCGCTATGACCCGCTGAACCTGTTCCGCATGAACCAGAATTTGCGGCCGAAACAAAGCCAGCGGGCCGCCTGA

Upstream 100 bases:

>100_bases
GGCGGCCCACCGTCAGGCGTAACTTGCGCGGTGTCTAATATAAGAGCAGAATTGAAGGCGTTTGAAGGAGATCGGCTCAT
AAGCAAATCGGGAGGAAACC

Downstream 100 bases:

>100_bases
GCCGCCCGCGTGACAGTAACGAAAGCCCGCGCCTCCCACCACAGGCGCGGGCTTTCGCTTGGCCATGGGGCATGGCTGTT
CCGTGGCTCAGTTCACATGG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MKSMSLTTLDRGKTTVDAATIETLSAQLRGTLLQQGDAAYNEARTVWNATVDRRPGLIVCCVGASDVIRAVNFARENRLL
VSVRGGGHNIAGSAVCDGGLMIDLSPMKSVRVDPVARRAWVGPGATLADVDRETQAFGLAVPTGINSTTGISGLTLGGGF
GWITRKFGLTIDNLVSADVVTADGKLLRASQTENPDLFWALRGGGGNFGIVTAFEFQLHQMGPQVLSGLVVHPFADAEKV
LEEYRNALETAPDELTCWVVMRQAPPLPFLPAEWHGKDVLVLAMCYCGDLQAGEKATKKLRAIGSPIADVVGPNPFTGWQ
QAFDPLLAPGARNYWKSHDFTELSDRAAEIVTEAIRELPGPECEIFIGHVGGAAGRVAQNATAFPQRSSHFVMNVHARWR
DPAMDRACIGWARGLYEAAKPYAAGTAYVNFMPEDEVDRVEAAYGGNYQRLLEIKQRYDPLNLFRMNQNLRPKQSQRAA

Sequences:

>Translated_479_residues
MKSMSLTTLDRGKTTVDAATIETLSAQLRGTLLQQGDAAYNEARTVWNATVDRRPGLIVCCVGASDVIRAVNFARENRLL
VSVRGGGHNIAGSAVCDGGLMIDLSPMKSVRVDPVARRAWVGPGATLADVDRETQAFGLAVPTGINSTTGISGLTLGGGF
GWITRKFGLTIDNLVSADVVTADGKLLRASQTENPDLFWALRGGGGNFGIVTAFEFQLHQMGPQVLSGLVVHPFADAEKV
LEEYRNALETAPDELTCWVVMRQAPPLPFLPAEWHGKDVLVLAMCYCGDLQAGEKATKKLRAIGSPIADVVGPNPFTGWQ
QAFDPLLAPGARNYWKSHDFTELSDRAAEIVTEAIRELPGPECEIFIGHVGGAAGRVAQNATAFPQRSSHFVMNVHARWR
DPAMDRACIGWARGLYEAAKPYAAGTAYVNFMPEDEVDRVEAAYGGNYQRLLEIKQRYDPLNLFRMNQNLRPKQSQRAA
>Mature_479_residues
MKSMSLTTLDRGKTTVDAATIETLSAQLRGTLLQQGDAAYNEARTVWNATVDRRPGLIVCCVGASDVIRAVNFARENRLL
VSVRGGGHNIAGSAVCDGGLMIDLSPMKSVRVDPVARRAWVGPGATLADVDRETQAFGLAVPTGINSTTGISGLTLGGGF
GWITRKFGLTIDNLVSADVVTADGKLLRASQTENPDLFWALRGGGGNFGIVTAFEFQLHQMGPQVLSGLVVHPFADAEKV
LEEYRNALETAPDELTCWVVMRQAPPLPFLPAEWHGKDVLVLAMCYCGDLQAGEKATKKLRAIGSPIADVVGPNPFTGWQ
QAFDPLLAPGARNYWKSHDFTELSDRAAEIVTEAIRELPGPECEIFIGHVGGAAGRVAQNATAFPQRSSHFVMNVHARWR
DPAMDRACIGWARGLYEAAKPYAAGTAYVNFMPEDEVDRVEAAYGGNYQRLLEIKQRYDPLNLFRMNQNLRPKQSQRAA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 51925; Mature: 51925

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00862 OX2_COVAL_FAD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSMSLTTLDRGKTTVDAATIETLSAQLRGTLLQQGDAAYNEARTVWNATVDRRPGLIVC
CCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCEEEE
CVGASDVIRAVNFARENRLLVSVRGGGHNIAGSAVCDGGLMIDLSPMKSVRVDPVARRAW
ECCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCEEEEECCCCCCCCCHHHHHHC
VGPGATLADVDRETQAFGLAVPTGINSTTGISGLTLGGGFGWITRKFGLTIDNLVSADVV
CCCCCCHHHCCCCHHHEEEEECCCCCCCCCCCCEEECCCHHHHHHHHCCCHHHHCCCCEE
TADGKLLRASQTENPDLFWALRGGGGNFGIVTAFEFQLHQMGPQVLSGLVVHPFADAEKV
ECCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEEHHHHHCCHHHHCCEEECCCCCHHHH
LEEYRNALETAPDELTCWVVMRQAPPLPFLPAEWHGKDVLVLAMCYCGDLQAGEKATKKL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHH
RAIGSPIADVVGPNPFTGWQQAFDPLLAPGARNYWKSHDFTELSDRAAEIVTEAIRELPG
HHHCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PECEIFIGHVGGAAGRVAQNATAFPQRSSHFVMNVHARWRDPAMDRACIGWARGLYEAAK
CCEEEEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
PYAAGTAYVNFMPEDEVDRVEAAYGGNYQRLLEIKQRYDPLNLFRMNQNLRPKQSQRAA
CCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCC
>Mature Secondary Structure
MKSMSLTTLDRGKTTVDAATIETLSAQLRGTLLQQGDAAYNEARTVWNATVDRRPGLIVC
CCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCEEEE
CVGASDVIRAVNFARENRLLVSVRGGGHNIAGSAVCDGGLMIDLSPMKSVRVDPVARRAW
ECCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCEEEEECCCCCCCCCHHHHHHC
VGPGATLADVDRETQAFGLAVPTGINSTTGISGLTLGGGFGWITRKFGLTIDNLVSADVV
CCCCCCHHHCCCCHHHEEEEECCCCCCCCCCCCEEECCCHHHHHHHHCCCHHHHCCCCEE
TADGKLLRASQTENPDLFWALRGGGGNFGIVTAFEFQLHQMGPQVLSGLVVHPFADAEKV
ECCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEEHHHHHCCHHHHCCEEECCCCCHHHH
LEEYRNALETAPDELTCWVVMRQAPPLPFLPAEWHGKDVLVLAMCYCGDLQAGEKATKKL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHH
RAIGSPIADVVGPNPFTGWQQAFDPLLAPGARNYWKSHDFTELSDRAAEIVTEAIRELPG
HHHCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PECEIFIGHVGGAAGRVAQNATAFPQRSSHFVMNVHARWRDPAMDRACIGWARGLYEAAK
CCEEEEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
PYAAGTAYVNFMPEDEVDRVEAAYGGNYQRLLEIKQRYDPLNLFRMNQNLRPKQSQRAA
CCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202460; 9384377 [H]