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The map label for this gene is yrkC [H]

Identifier: 13475621

GI number: 13475621

Start: 5530512

End: 5530925

Strand: Reverse

Name: yrkC [H]

Synonym: mll6738

Alternate gene names: 13475621

Gene position: 5530925-5530512 (Counterclockwise)

Preceding gene: 13475624

Following gene: 13475620

Centisome position: 78.61

GC content: 54.59

Gene sequence:

>414_bases
GTGGAGAAAGAAATCGTCATGAAAGGTTTTGTGGGCGACATTGAGGACCTGACCGAAGAAAACAACGCCTTCCGACGCGT
GCTCTATACGACAAGAAGGATGCAACTCGTGCTGATGGCGCTCCAGCCTGGGGAGGAAATCGGAGCGGAAGTTCATCACG
ACCGCGATCAGTTCTTCCGGGTGGAAAAGGGCACAGGAGAGATATGGATCGACGGCGTTGCCTCCGACATAAAGTCCGAT
ATGGCTATGATTGGCCCCGCGGGTGCGCGGCACAACGTGAAGAACACAGGCAAGAAGCCGCTGAAACTCTACACGCTCTA
CGCCCCACCTGAACATATGGATGGAACGGTGCACGCCACCAAGGCGGATGCCGAAGCGTCCAAAGAACATTTCAATGGCA
AGACGACCGAATAA

Upstream 100 bases:

>100_bases
GTTCGCGCCTAAGCTCGCCGGGCGAGCGACGCATGACTGGTTTAGGAGATCTCTCGGACCGAGCCTGTTGGGAGCGGACT
TGGCGGTCACCCGATGACGC

Downstream 100 bases:

>100_bases
CGGTCTTTCTGGGCGTAGACGAAACCGATGGTGTCATGATCCACAGGCAAAGGCACACTAGGACGCGGTGACCAGTCCCA
AGACTTCAACGTTTGGAATT

Product: hypothetical protein

Products: GDP-D-mannose; Phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MEKEIVMKGFVGDIEDLTEENNAFRRVLYTTRRMQLVLMALQPGEEIGAEVHHDRDQFFRVEKGTGEIWIDGVASDIKSD
MAMIGPAGARHNVKNTGKKPLKLYTLYAPPEHMDGTVHATKADAEASKEHFNGKTTE

Sequences:

>Translated_137_residues
MEKEIVMKGFVGDIEDLTEENNAFRRVLYTTRRMQLVLMALQPGEEIGAEVHHDRDQFFRVEKGTGEIWIDGVASDIKSD
MAMIGPAGARHNVKNTGKKPLKLYTLYAPPEHMDGTVHATKADAEASKEHFNGKTTE
>Mature_137_residues
MEKEIVMKGFVGDIEDLTEENNAFRRVLYTTRRMQLVLMALQPGEEIGAEVHHDRDQFFRVEKGTGEIWIDGVASDIKSD
MAMIGPAGARHNVKNTGKKPLKLYTLYAPPEHMDGTVHATKADAEASKEHFNGKTTE

Specific function: Involved In The Biosynthesis Of The Capsular Polysaccharide Colanic Acid. [C]

COG id: COG0662

COG function: function code G; Mannose-6-phosphate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: 2.7.7.22 [C]

Molecular weight: Translated: 15358; Mature: 15358

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEIVMKGFVGDIEDLTEENNAFRRVLYTTRRMQLVLMALQPGEEIGAEVHHDRDQFFR
CCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHCCCCCCCCCCEEE
VEKGTGEIWIDGVASDIKSDMAMIGPAGARHNVKNTGKKPLKLYTLYAPPEHMDGTVHAT
EECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEC
KADAEASKEHFNGKTTE
CCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MEKEIVMKGFVGDIEDLTEENNAFRRVLYTTRRMQLVLMALQPGEEIGAEVHHDRDQFFR
CCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHCCCCCCCCCCEEE
VEKGTGEIWIDGVASDIKSDMAMIGPAGARHNVKNTGKKPLKLYTLYAPPEHMDGTVHAT
EECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEC
KADAEASKEHFNGKTTE
CCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDP; H+; D-Mannose 1-phosphate [C]

Specific reaction: GDP + H+ + D-Mannose 1-phosphate --> GDP-D-mannose + Phosphate [C]

General reaction: Transferring phosphorus-containing groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]