BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ucpA [C]

Identifier: 13475600

GI number: 13475600

Start: 5505047

End: 5505808

Strand: Reverse

Name: ucpA [C]

Synonym: mll6713

Alternate gene names: 13475600

Gene position: 5505808-5505047 (Counterclockwise)

Preceding gene: 13475603

Following gene: 13475597

Centisome position: 78.25

GC content: 62.6

Gene sequence:

>762_bases
ATGATCCTGAAGGACAGGACCGCGATCGTCACCGGCGCGGGATCCGGCATCGGCAGGGCGGCGGCGCTGATCATTGCGCG
CGAGGGTGCGATGGTCGGCGTGGCGGATCGTAGCGCCGACGGCGCCAACGCCACCGTCGACCAGATTCTTGCCGCAGGTG
GCCGGGCAAAGGCGCTTGTGTTCGACCTGACCGACGACCAGGCGCTTGAAGCCGGTTTTCACGATTTCATCCACACTCAG
GGCAGGATCGACATCCTGCACAATCATGCCGGCGTACAGGTCGAAGGCGACGTGCTCGGAGTGAGCGTGAAAGGCTTCGA
TACCTCCTGGACGCTCAATGTGCGGGCTCACTTCCTCGGTGCCCGTATCGTCATGCCATTCATGAAGAAGGCAGGCCGCG
GCGTCATCCTCAACACGTCGTCGAGCTCCGGCGTGCTCTACGACCGCGAGATGATCGCCTATACGACGACCAAGCACGCG
GTGATCGCGATGACCAGGCAGATGGCCGGCGACTATGGCCGCTTCGGCATTCGCGTCAACGCGCTTTGCCCGGGTTGGGT
GGACACGCCCTTCAATGCGCCTTTCATCGCCCAGATGGGAGGCCGGGAAGCCATCGAAGCCTACATCCGCGAAAGGGTGC
CGCTTGGCCGTTGGGCAACCGTCGAGGAGATCGCGGAGGCAGTACTGTTTCTGGTGTCTGACCGGTCCTCGTACATGACG
GGTCAGATCCTGGTTGTCGATGGAGGAGAAACGGTGATCTAG

Upstream 100 bases:

>100_bases
CTGTCTGGTCCTCAAAGGTTGATCGGCGCGCAGCGGAGCGGGCGAGGCTCGTCCGCCGGATGATGCAGGATTACAAGCCG
GCGAGAAAGGGTGGAGAGGG

Downstream 100 bases:

>100_bases
CTTGTGGAGAAAGGCCCGGATCGTGCCCTCGACGGCGTAGGCGGGGATTCATGGCGACTACACATCTTGATCAGCACAAT
GTAGTTCAATCTGTATTTGG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MILKDRTAIVTGAGSGIGRAAALIIAREGAMVGVADRSADGANATVDQILAAGGRAKALVFDLTDDQALEAGFHDFIHTQ
GRIDILHNHAGVQVEGDVLGVSVKGFDTSWTLNVRAHFLGARIVMPFMKKAGRGVILNTSSSSGVLYDREMIAYTTTKHA
VIAMTRQMAGDYGRFGIRVNALCPGWVDTPFNAPFIAQMGGREAIEAYIRERVPLGRWATVEEIAEAVLFLVSDRSSYMT
GQILVVDGGETVI

Sequences:

>Translated_253_residues
MILKDRTAIVTGAGSGIGRAAALIIAREGAMVGVADRSADGANATVDQILAAGGRAKALVFDLTDDQALEAGFHDFIHTQ
GRIDILHNHAGVQVEGDVLGVSVKGFDTSWTLNVRAHFLGARIVMPFMKKAGRGVILNTSSSSGVLYDREMIAYTTTKHA
VIAMTRQMAGDYGRFGIRVNALCPGWVDTPFNAPFIAQMGGREAIEAYIRERVPLGRWATVEEIAEAVLFLVSDRSSYMT
GQILVVDGGETVI
>Mature_253_residues
MILKDRTAIVTGAGSGIGRAAALIIAREGAMVGVADRSADGANATVDQILAAGGRAKALVFDLTDDQALEAGFHDFIHTQ
GRIDILHNHAGVQVEGDVLGVSVKGFDTSWTLNVRAHFLGARIVMPFMKKAGRGVILNTSSSSGVLYDREMIAYTTTKHA
VIAMTRQMAGDYGRFGIRVNALCPGWVDTPFNAPFIAQMGGREAIEAYIRERVPLGRWATVEEIAEAVLFLVSDRSSYMT
GQILVVDGGETVI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=37.9032258064516, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=29.3172690763052, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=32.1285140562249, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=32.156862745098, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=30.078125, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=29.4354838709677, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=29.0836653386454, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=30.6666666666667, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40254986, Length=214, Percent_Identity=29.4392523364486, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI142976729, Length=186, Percent_Identity=25.2688172043011, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503301, Length=237, Percent_Identity=25.7383966244726, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI210032110, Length=186, Percent_Identity=25.2688172043011, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=24.031007751938, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4504505, Length=189, Percent_Identity=29.1005291005291, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=24.7572815533981, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=25.8964143426295, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI209862901, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI19923983, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=36.078431372549, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=38.0392156862745, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.9236947791165, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=32.0158102766798, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=30.9236947791165, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=28.4, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=30.46875, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=30.9236947791165, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.906976744186, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=27.734375, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=27.6, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=34.3873517786561, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=34.5864661654135, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=32.6771653543307, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=33.969465648855, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=34.0823970037453, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=32.7137546468402, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=32.8358208955224, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=33.587786259542, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=33.8289962825279, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=32.4528301886792, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=32.8301886792453, Blast_Score=105, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=33.8345864661654, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=30.7086614173228, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=32.1969696969697, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=30.5882352941176, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=30.9236947791165, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.203007518797, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=31.3432835820896, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=31.2741312741313, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=29.5454545454545, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=30.188679245283, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=29.8804780876494, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=30.1526717557252, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=28.8770053475936, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=29.5880149812734, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=29.1005291005291, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=30, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=26.615969581749, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=25.1336898395722, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=187, Percent_Identity=25.1336898395722, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=270, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=267, Percent_Identity=28.8389513108614, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=24.4, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=188, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=26.9430051813472, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=33.8645418326693, Blast_Score=136, Evalue=1e-32,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=35.0393700787402, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI23397609, Length=261, Percent_Identity=32.183908045977, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=35.408560311284, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.5555555555556, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=30.078125, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357673, Length=255, Percent_Identity=28.6274509803922, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644337, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643142, Length=261, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=32.8042328042328, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24649181, Length=186, Percent_Identity=30.1075268817204, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=24.9056603773585, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28573296, Length=221, Percent_Identity=29.8642533936652, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161076371, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45553409, Length=223, Percent_Identity=28.2511210762332, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647948, Length=223, Percent_Identity=28.2511210762332, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647946, Length=223, Percent_Identity=28.2511210762332, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581726, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27022; Mature: 27022

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKDRTAIVTGAGSGIGRAAALIIAREGAMVGVADRSADGANATVDQILAAGGRAKALV
CEECCCEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCEEEEE
FDLTDDQALEAGFHDFIHTQGRIDILHNHAGVQVEGDVLGVSVKGFDTSWTLNVRAHFLG
EECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEECCEEEEEEECCCCEEEEEEEEEEHH
ARIVMPFMKKAGRGVILNTSSSSGVLYDREMIAYTTTKHAVIAMTRQMAGDYGRFGIRVN
HHHHHHHHHHCCCEEEEECCCCCCEEEECEEEEEECCCHHEEHHHHHHCCCCCCEEEEEE
ALCPGWVDTPFNAPFIAQMGGREAIEAYIRERVPLGRWATVEEIAEAVLFLVSDRSSYMT
EECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEECCCCCCEE
GQILVVDGGETVI
EEEEEECCCCCCC
>Mature Secondary Structure
MILKDRTAIVTGAGSGIGRAAALIIAREGAMVGVADRSADGANATVDQILAAGGRAKALV
CEECCCEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCEEEEE
FDLTDDQALEAGFHDFIHTQGRIDILHNHAGVQVEGDVLGVSVKGFDTSWTLNVRAHFLG
EECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEECCEEEEEEECCCCEEEEEEEEEEHH
ARIVMPFMKKAGRGVILNTSSSSGVLYDREMIAYTTTKHAVIAMTRQMAGDYGRFGIRVN
HHHHHHHHHHCCCEEEEECCCCCCEEEECEEEEEECCCHHEEHHHHHHCCCCCCEEEEEE
ALCPGWVDTPFNAPFIAQMGGREAIEAYIRERVPLGRWATVEEIAEAVLFLVSDRSSYMT
EECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEECCCCCCEE
GQILVVDGGETVI
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]