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The map label for this gene is ligB [H]

Identifier: 13475590

GI number: 13475590

Start: 5492926

End: 5493654

Strand: Reverse

Name: ligB [H]

Synonym: mll6696

Alternate gene names: 13475590

Gene position: 5493654-5492926 (Counterclockwise)

Preceding gene: 13475591

Following gene: 13475589

Centisome position: 78.08

GC content: 61.73

Gene sequence:

>729_bases
GTGCGCAGATGCTGGCAATTGCTCGGCGGGGGCTCGGCACAGGCGGCAGGCGTCCATGTTGGGGGGATGTCGGGCTGCCT
GTGCCGATTAGCCGCCGCTGCGCGATCAGAGGTGGCGTCATTGAGTAAGCGTGCCAAGGTGACCGGCGGCCGGCTGGAGT
TCATTCCGCCGCAGATCCCGACTCGGGTCGAGGAGCCGCCCGGAGATGAGGGATGGGTTCACGAGGTCAATCTCGACGGC
TACCGCACGCAGATCATCATCGATAAAGGCAGCGTGCGCCTTTACAGCAAGAACGGCCGTGACTGGACCACCAAATATTG
GCCCATCGCGCTGGCCGTCGAGCTGCCATGCCGGGCCGCCATTATCGACGGCGATGTCATTGTGCCGGACGAGCAGAGCG
CTCACGATTACCCTTCGCTGGAAGCCGCGATCTGGAACGAACCGAGCCGGCTCGCGTTCGTCGCGTTCGACATCCTCCAT
CTCGATGGTCGCAATCTAGTCTCCTTGCCCCTGCTGCAGCGCAAGCAGGCGCTATGGAAACTGGTTGAGCACGGCCTCGG
CAGGATCCAGTACAGCGAGCATTTCGAAAGCAGTGCGCTGGCGATCTTTCGCGCCATCGAGAAGGTGGGGATCAAGAGCA
TCATCTCGAAGCGCGCCGACAGCAGCTACAGGAGCGGACCGTCGAACACATGGTTGAAGGCCAAATACTTCGAGGAAGCC
GATTTCTGA

Upstream 100 bases:

>100_bases
TCCGCCCGAAATCAGCTGCGTACTCCAAGAGTACCGCACCGAGTGAGATATGTACTCCATGACAAGTATTTGGATGCGAA
GGTAACGACAATTCGGCCTG

Downstream 100 bases:

>100_bases
GCATCGACGACGCTTCTGCCGCAACCGCGGCCCCAGCGCCGGCACCAGCAATGTCCTCGAGCAGGAGGTCGTGCGCGAGA
AGCAGGCAGTTCAAACCTAT

Product: DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRRCWQLLGGGSAQAAGVHVGGMSGCLCRLAAAARSEVASLSKRAKVTGGRLEFIPPQIPTRVEEPPGDEGWVHEVNLDG
YRTQIIIDKGSVRLYSKNGRDWTTKYWPIALAVELPCRAAIIDGDVIVPDEQSAHDYPSLEAAIWNEPSRLAFVAFDILH
LDGRNLVSLPLLQRKQALWKLVEHGLGRIQYSEHFESSALAIFRAIEKVGIKSIISKRADSSYRSGPSNTWLKAKYFEEA
DF

Sequences:

>Translated_242_residues
MRRCWQLLGGGSAQAAGVHVGGMSGCLCRLAAAARSEVASLSKRAKVTGGRLEFIPPQIPTRVEEPPGDEGWVHEVNLDG
YRTQIIIDKGSVRLYSKNGRDWTTKYWPIALAVELPCRAAIIDGDVIVPDEQSAHDYPSLEAAIWNEPSRLAFVAFDILH
LDGRNLVSLPLLQRKQALWKLVEHGLGRIQYSEHFESSALAIFRAIEKVGIKSIISKRADSSYRSGPSNTWLKAKYFEEA
DF
>Mature_242_residues
MRRCWQLLGGGSAQAAGVHVGGMSGCLCRLAAAARSEVASLSKRAKVTGGRLEFIPPQIPTRVEEPPGDEGWVHEVNLDG
YRTQIIIDKGSVRLYSKNGRDWTTKYWPIALAVELPCRAAIIDGDVIVPDEQSAHDYPSLEAAIWNEPSRLAFVAFDILH
LDGRNLVSLPLLQRKQALWKLVEHGLGRIQYSEHFESSALAIFRAIEKVGIKSIISKRADSSYRSGPSNTWLKAKYFEEA
DF

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: NA

Molecular weight: Translated: 26829; Mature: 26829

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRCWQLLGGGSAQAAGVHVGGMSGCLCRLAAAARSEVASLSKRAKVTGGRLEFIPPQIP
CCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
TRVEEPPGDEGWVHEVNLDGYRTQIIIDKGSVRLYSKNGRDWTTKYWPIALAVELPCRAA
CCCCCCCCCCCCEEEEECCCEEEEEEEECCCEEEEECCCCCCCCEEEEEEEEEECCCEEE
IIDGDVIVPDEQSAHDYPSLEAAIWNEPSRLAFVAFDILHLDGRNLVSLPLLQRKQALWK
EECCCEECCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEECCCCEEECHHHHHHHHHHH
LVEHGLGRIQYSEHFESSALAIFRAIEKVGIKSIISKRADSSYRSGPSNTWLKAKYFEEA
HHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC
DF
CC
>Mature Secondary Structure
MRRCWQLLGGGSAQAAGVHVGGMSGCLCRLAAAARSEVASLSKRAKVTGGRLEFIPPQIP
CCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
TRVEEPPGDEGWVHEVNLDGYRTQIIIDKGSVRLYSKNGRDWTTKYWPIALAVELPCRAA
CCCCCCCCCCCCEEEEECCCEEEEEEEECCCEEEEECCCCCCCCEEEEEEEEEECCCEEE
IIDGDVIVPDEQSAHDYPSLEAAIWNEPSRLAFVAFDILHLDGRNLVSLPLLQRKQALWK
EECCCEECCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEECCCCEEECHHHHHHHHHHH
LVEHGLGRIQYSEHFESSALAIFRAIEKVGIKSIISKRADSSYRSGPSNTWLKAKYFEEA
HHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC
DF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]