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The map label for this gene is qseB [H]

Identifier: 13475522

GI number: 13475522

Start: 5417787

End: 5418452

Strand: Direct

Name: qseB [H]

Synonym: mlr6617

Alternate gene names: 13475522

Gene position: 5417787-5418452 (Clockwise)

Preceding gene: 13475521

Following gene: 13475523

Centisome position: 77.0

GC content: 61.26

Gene sequence:

>666_bases
ATGAAGATCCTCCTCGCCGAGGACGAGCCCCGTATCGCGGCCGATGTCGCTACAGTCCTTAAGGCATCCGGAATGGCGGT
TGACACCGTTCGCGATGGAGAGGCTGCCTGGTTCGCAGGCGATGTGGAGAACTATGATGCTGCGATCCTAGATCTCGGGT
TGCCCAAGCTCGATGGTCTTACGATCTTGAAACGTTGGCGAGCCAACGCCCGCCGGTTCCCGGTCCTCATCTTGACCGCC
AGGGGCATGTGGACGGAACGTGTCGACGGCATCAATGCTGGCGCTGACGACTACCTCCCGAAACCTTTCGAAATGGAAGA
ACTGCTTGCCCGACTACGCGCAATCCTACGCCGCTCAACGGGGCAGGCGGCGCCGGTGCTCAAGTCGGGGCCACTCGTCC
TGGACACACGCCAGATGCGAATTTCGCTGCGCGGCATTCCCGTTGCGCTTTCGCCGCTGGAATACCGGCTCCTGGCGTTT
CTGATGCATCATGCCGGCCGGGTGGTGGCGCCGACCGAGCTGGCCGAGCATCTTTACGATTCAGGCAACGACCGGGATCC
CAATGCGGTCGAAGTGATCGTCGCTCGCTTGCGTCGCAAGCTTGGGAGTGACGTCATCGAAACGCGGCGCGGATTCGGGT
ACTTCGTCCCAGACGATTTCAGCTGA

Upstream 100 bases:

>100_bases
GGGTCTACCGGTTTCAGGTCGTCGGTGCCGATGGCCGGCGAAAGACCGTCGACGTCGACGCCGGCGCCGGTGCCATCATG
CGCAACGGGGAGGGTGACTG

Downstream 100 bases:

>100_bases
TGGGCAACTCGATCCGCTTCAGGCTCTGGTTGGCCGCAACGATCTCGATCCTTGTTGCTCTTGCCATCGCCGGTGTCGGA
CTGCGCTATCTGTTCGAGCT

Product: two-component system, regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGLTILKRWRANARRFPVLILTA
RGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRSTGQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAF
LMHHAGRVVAPTELAEHLYDSGNDRDPNAVEVIVARLRRKLGSDVIETRRGFGYFVPDDFS

Sequences:

>Translated_221_residues
MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGLTILKRWRANARRFPVLILTA
RGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRSTGQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAF
LMHHAGRVVAPTELAEHLYDSGNDRDPNAVEVIVARLRRKLGSDVIETRRGFGYFVPDDFS
>Mature_221_residues
MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGLTILKRWRANARRFPVLILTA
RGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRSTGQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAF
LMHHAGRVVAPTELAEHLYDSGNDRDPNAVEVIVARLRRKLGSDVIETRRGFGYFVPDDFS

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=214, Percent_Identity=47.196261682243, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=35.1598173515982, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=40.2777777777778, Blast_Score=147, Evalue=5e-37,
Organism=Escherichia coli, GI1786784, Length=228, Percent_Identity=36.8421052631579, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=38.0733944954128, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=34.5454545454545, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=33.1838565022422, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=34.6491228070175, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786911, Length=229, Percent_Identity=34.4978165938865, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=31.7391304347826, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=27.1929824561404, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=27.0386266094421, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=28.9719626168224, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24504; Mature: 24504

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGL
CEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCEEEEECCCCCCCHH
TILKRWRANARRFPVLILTARGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRST
HHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAFLMHHAGRVVAPTELAEHLYD
CCCCCCCCCCCEEEECCEEEEEECCCCEEECHHHHHHHHHHHHHCCCEECHHHHHHHHHH
SGNDRDPNAVEVIVARLRRKLGSDVIETRRGFGYFVPDDFS
CCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGL
CEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCEEEEECCCCCCCHH
TILKRWRANARRFPVLILTARGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRST
HHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAFLMHHAGRVVAPTELAEHLYD
CCCCCCCCCCCEEEECCEEEEEECCCCEEECHHHHHHHHHHHHHCCCEECHHHHHHHHHH
SGNDRDPNAVEVIVARLRRKLGSDVIETRRGFGYFVPDDFS
CCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]