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The map label for this gene is intA [C]

Identifier: 13475372

GI number: 13475372

Start: 5241882

End: 5242130

Strand: Reverse

Name: intA [C]

Synonym: msl6419

Alternate gene names: 13475372

Gene position: 5242130-5241882 (Counterclockwise)

Preceding gene: 13475373

Following gene: 13475363

Centisome position: 74.5

GC content: 57.43

Gene sequence:

>249_bases
GTGTGGACCATCCCGGAAGCACGCATGAAAATGCGGCGGCCGCACCGCGTTGCACTTTCGAGGCAGGCCATCAAAATCCT
GACCGATCTCAGAGACATTTCCGGCGGCGAGGCGCTGCTGTTTCCAAGTGTGCGATCGGGTTCTCGTCCGATTTCCGACA
ATACACTTAACGCCGCCCTGCGTCGCATGGGTTACAGCAAGAAAAAGCAGCGGCTCACGGTTTCCGAGCAACGGCATCAA
CTCTGTTGA

Upstream 100 bases:

>100_bases
CTATTTCCGGAAACTTAGCGTCGCATAACTGCGCCTACTGTTTCCCCGCCCCGGCGAGTTGCGAGCCGCCGGATAAGAAG
AGTTCGACTTCAAAGGTTCG

Downstream 100 bases:

>100_bases
ATGAATGCGGCAAGTGGCATCCAGACGCAAGAGAGACAGCTGACCCATATTGAAAAGAACGACGTTCGGCGCACTTACGC
CAGGGCAGAGCACTGGGAAA

Product: symbiosis island integrase

Products: NA

Alternate protein names: Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Protein; Symbiosis Island Integrase; Phage Integrase; DNA Integration/Recombination/Inversion Protein; Prophage CP4-Like Integrase; Prophage P4 Integrase; Phage-Related Integrase; Prophage Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Integrase I; Integrase Prophage Protein; Bacteriophage Integrase; CP4-Like Integrase; Bacteriophage P4-Type Integrase; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MWTIPEARMKMRRPHRVALSRQAIKILTDLRDISGGEALLFPSVRSGSRPISDNTLNAALRRMGYSKKKQRLTVSEQRHQ
LC

Sequences:

>Translated_82_residues
MWTIPEARMKMRRPHRVALSRQAIKILTDLRDISGGEALLFPSVRSGSRPISDNTLNAALRRMGYSKKKQRLTVSEQRHQ
LC
>Mature_82_residues
MWTIPEARMKMRRPHRVALSRQAIKILTDLRDISGGEALLFPSVRSGSRPISDNTLNAALRRMGYSKKKQRLTVSEQRHQ
LC

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788974, Length=63, Percent_Identity=47.6190476190476, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9431; Mature: 9431

Theoretical pI: Translated: 12.07; Mature: 12.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWTIPEARMKMRRPHRVALSRQAIKILTDLRDISGGEALLFPSVRSGSRPISDNTLNAAL
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHH
RRMGYSKKKQRLTVSEQRHQLC
HHCCCCCHHHHCCHHHHHCCCC
>Mature Secondary Structure
MWTIPEARMKMRRPHRVALSRQAIKILTDLRDISGGEALLFPSVRSGSRPISDNTLNAAL
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHH
RRMGYSKKKQRLTVSEQRHQLC
HHCCCCCHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA