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The map label for this gene is trbI [H]

Identifier: 13475359

GI number: 13475359

Start: 5228413

End: 5229642

Strand: Direct

Name: trbI [H]

Synonym: mlr6405

Alternate gene names: 13475359

Gene position: 5228413-5229642 (Clockwise)

Preceding gene: 13475358

Following gene: 13475360

Centisome position: 74.31

GC content: 60.57

Gene sequence:

>1230_bases
GTGAAGGGGAACTTCATGACCGATACGTCCCGCCCCAATACCCCTCCAAAACTCGATCCCGAGCAGCTGCAGTTGCGAGC
CTCGCCCCGCCGCGCTGTCCGATTCAGGCGCGGTGTGATCATCGCCATCGCTGCAGTCGGATCCGGTGCCATTCTGGGCG
TCACGATGATGGCGCTTCAAGGACCGGCATGGCGTATCAAGCACCAGGCAGAGGACCGCTATAACACCGAGCGCAAGCCA
CCCGCCGAGGGACTAGAAGCGCTTCCCAAGGACTATTCCGGGATCATGCCGAAGGCCCCTGTGCTCGGACCGCCACTGCC
CGGCGACCTCGGTCGCCCCATCCTTGAACGCCAACGTCAGCTCGGCATCGCGCCAGGGCAGGATATCTCCGCCGAGGAGC
AGCGCCTTGCCCAGCAAGCAATTGAGGCGCGCGAGTCGCAAGTCTTGTTCCGGATCGACAATCGACCCAGACAGACAGAT
GTCGCCGGAGGCGGGCCGAGTGCGCAGCAGCCGTCTGAGGCGCTTCCGCAATCCGGAGCGACGCGCACGTCAGCTTCCGT
TGCCCCAGCCGAGGGTGACCAGAACAACCAACAGCGCAAGCTCGATTTTGTCAGTCAGCGAAACACAAGCGGGATCTACA
ATCCGCATGCGCTGCAGACGCCGGCCTCGCCCTACCAACTGATGGCCGGCAGCGTGATCGCGGCCAGTCTCGTCACCGGC
ATAAATTCCGACTTGCCTGGCCTTGTCGTCGCGCAGGTCACCGAGAATGTGCACGACACAGTCACCGGCAGCATTGTGCT
CATTCCGCAAGGCTCACGCCTCATCGGCACTTATGACAGCGTCGTGGCTTTTGGGCAGAGGCGCGCATTGCTGGTCTGGC
AGCGAATAATCCTGCCCGACGGTTCCTCGATCGAAATCGACAATCTGCCAGCGACGGATACTGCCGGCTATGCTGGGCTT
GAAGACAAGGTCGATTTTCACACCTGGCAGCTGATCAAGGGAGTTGCTCTAGCGACGCTACTGGGCGTTGGTACCGAGTT
GAGCTTTGGGGAAAACGAAAGCGACCTAGTTAAGGCGATCCGGGAATCCACTCAGCAAAACATCAGTCAAGCCGGCCAGC
GCATCACCGAAAAGAACCTGAATATTCAACCCACCATTATCGTCCGCCCCGGTTGGCCCCTACGCGTGATTGTACACAAG
GATCTTGTGCTGCGCCCATACCCGACTTGA

Upstream 100 bases:

>100_bases
AACTGCGGCTCGGCACCAAGCAACAGCAGGTGGTGCGCATAACAAGGACCGACGGCCGGAAACCGACGCGGCGCATGGCA
CTCTTTCCACGTCTTGGCAG

Downstream 100 bases:

>100_bases
ACAGGAGTAATCATGGCAGATCTGAAACTTGGAAAGCTTCCGGACCGGACACCTTCGAAGATGACCATCACCGTTAGCGC
GGACCTGAACCAAGCACTCA

Product: conjugal transfer protein trbI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKGNFMTDTSRPNTPPKLDPEQLQLRASPRRAVRFRRGVIIAIAAVGSGAILGVTMMALQGPAWRIKHQAEDRYNTERKP
PAEGLEALPKDYSGIMPKAPVLGPPLPGDLGRPILERQRQLGIAPGQDISAEEQRLAQQAIEARESQVLFRIDNRPRQTD
VAGGGPSAQQPSEALPQSGATRTSASVAPAEGDQNNQQRKLDFVSQRNTSGIYNPHALQTPASPYQLMAGSVIAASLVTG
INSDLPGLVVAQVTENVHDTVTGSIVLIPQGSRLIGTYDSVVAFGQRRALLVWQRIILPDGSSIEIDNLPATDTAGYAGL
EDKVDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAIRESTQQNISQAGQRITEKNLNIQPTIIVRPGWPLRVIVHK
DLVLRPYPT

Sequences:

>Translated_409_residues
MKGNFMTDTSRPNTPPKLDPEQLQLRASPRRAVRFRRGVIIAIAAVGSGAILGVTMMALQGPAWRIKHQAEDRYNTERKP
PAEGLEALPKDYSGIMPKAPVLGPPLPGDLGRPILERQRQLGIAPGQDISAEEQRLAQQAIEARESQVLFRIDNRPRQTD
VAGGGPSAQQPSEALPQSGATRTSASVAPAEGDQNNQQRKLDFVSQRNTSGIYNPHALQTPASPYQLMAGSVIAASLVTG
INSDLPGLVVAQVTENVHDTVTGSIVLIPQGSRLIGTYDSVVAFGQRRALLVWQRIILPDGSSIEIDNLPATDTAGYAGL
EDKVDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAIRESTQQNISQAGQRITEKNLNIQPTIIVRPGWPLRVIVHK
DLVLRPYPT
>Mature_409_residues
MKGNFMTDTSRPNTPPKLDPEQLQLRASPRRAVRFRRGVIIAIAAVGSGAILGVTMMALQGPAWRIKHQAEDRYNTERKP
PAEGLEALPKDYSGIMPKAPVLGPPLPGDLGRPILERQRQLGIAPGQDISAEEQRLAQQAIEARESQVLFRIDNRPRQTD
VAGGGPSAQQPSEALPQSGATRTSASVAPAEGDQNNQQRKLDFVSQRNTSGIYNPHALQTPASPYQLMAGSVIAASLVTG
INSDLPGLVVAQVTENVHDTVTGSIVLIPQGSRLIGTYDSVVAFGQRRALLVWQRIILPDGSSIEIDNLPATDTAGYAGL
EDKVDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAIRESTQQNISQAGQRITEKNLNIQPTIIVRPGWPLRVIVHK
DLVLRPYPT

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 44222; Mature: 44222

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGNFMTDTSRPNTPPKLDPEQLQLRASPRRAVRFRRGVIIAIAAVGSGAILGVTMMALQ
CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHC
GPAWRIKHQAEDRYNTERKPPAEGLEALPKDYSGIMPKAPVLGPPLPGDLGRPILERQRQ
CCCCEECCHHHHHCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LGIAPGQDISAEEQRLAQQAIEARESQVLFRIDNRPRQTDVAGGGPSAQQPSEALPQSGA
CCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCC
TRTSASVAPAEGDQNNQQRKLDFVSQRNTSGIYNPHALQTPASPYQLMAGSVIAASLVTG
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
INSDLPGLVVAQVTENVHDTVTGSIVLIPQGSRLIGTYDSVVAFGQRRALLVWQRIILPD
CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECHHHHHHHCCCHHEEHHHHHHCCC
GSSIEIDNLPATDTAGYAGLEDKVDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAI
CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
RESTQQNISQAGQRITEKNLNIQPTIIVRPGWPLRVIVHKDLVLRPYPT
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCEEECCCCC
>Mature Secondary Structure
MKGNFMTDTSRPNTPPKLDPEQLQLRASPRRAVRFRRGVIIAIAAVGSGAILGVTMMALQ
CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHC
GPAWRIKHQAEDRYNTERKPPAEGLEALPKDYSGIMPKAPVLGPPLPGDLGRPILERQRQ
CCCCEECCHHHHHCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LGIAPGQDISAEEQRLAQQAIEARESQVLFRIDNRPRQTDVAGGGPSAQQPSEALPQSGA
CCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCC
TRTSASVAPAEGDQNNQQRKLDFVSQRNTSGIYNPHALQTPASPYQLMAGSVIAASLVTG
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
INSDLPGLVVAQVTENVHDTVTGSIVLIPQGSRLIGTYDSVVAFGQRRALLVWQRIILPD
CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECHHHHHHHCCCHHEEHHHHHHCCC
GSSIEIDNLPATDTAGYAGLEDKVDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAI
CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
RESTQQNISQAGQRITEKNLNIQPTIIVRPGWPLRVIVHKDLVLRPYPT
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]