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The map label for this gene is trbF [H]

Identifier: 13475357

GI number: 13475357

Start: 5226666

End: 5227391

Strand: Direct

Name: trbF [H]

Synonym: mlr6403

Alternate gene names: 13475357

Gene position: 5226666-5227391 (Clockwise)

Preceding gene: 13475356

Following gene: 13475358

Centisome position: 74.28

GC content: 62.95

Gene sequence:

>726_bases
ATGCTATTCAAGCGACCCATTCAACGTTACGGCAAGACGCCCGAGCCGGTCACGCCGTATCAGAAGGCCGCGCAGCTCTG
GGACGAGCGCATAGGCTCATCTCGAGTGCAGGCCCGCAACTGGCGGTTCATGGCTCTTGGCTGTCTGACCTTGGCGGCCG
GACTTTCCGGCGGACTCGTGTGGCAGTCGATGCAGAGCCGCGTCGTGCCTTACGTCGTCGAGGTCGACGGCTTCGGCGAG
GCACGCGCCGTTGCGCCGGCAATCCGGGACTACGAGCCCTCCGATGCCCAGATCGCGTGGCATCTCGGCCGCTTCATTCA
GAATGTCCGTTCCGTTTCCACCGATCCGGTGCTGGTGCGGCAGAACTGGCTTTCGGCCTATGACTTCGCCACCGACCGCG
CGGCGCTCTTTCTCAACGAGTACGCCAAGGCGAACGATCCTTTCGGCCAGATCGGCACACGCAGCGTGTCGGTGCAAGTG
ACCAGCGTGGTCAGGGCTTCCGACAGCTCGTTCCAGGTCAAATGGGCCGAGCAGGTTTTTGAGCGCGGCAGCCTTGCCAG
CACGACGCGCTGGACCGCGATCCTCACCATCGTGATCCGCCCGCCAAGTAATACTGACCAACTGCGCAACAACCCGCTCG
GCGTCTTCATCAATGCGATCGACTGGTCGCGCGAGCTCGACAGTGCTGCGCCGACGTCCGTTTCCCCAAAAGGAGTCCAC
CAATGA

Upstream 100 bases:

>100_bases
GACAGCCCGTGCCCACCGTCACACCGCCATGCAGGCCGTCCGTGAAGGCGACAGGCCGGGAGGCAGCGCCAATCCCTCTC
TCAACGACAAGGACGACTAA

Downstream 100 bases:

>100_bases
AGAATAGAATGTCGTCGGTCCGTGCCGTGCTGATCCTGTCGGCCTCTACAGCAGTCCTCTCCGCCTGCGCGTCGAAGCCG
GTACCGCCGCCTGAGATTTC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLFKRPIQRYGKTPEPVTPYQKAAQLWDERIGSSRVQARNWRFMALGCLTLAAGLSGGLVWQSMQSRVVPYVVEVDGFGE
ARAVAPAIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVRQNWLSAYDFATDRAALFLNEYAKANDPFGQIGTRSVSVQV
TSVVRASDSSFQVKWAEQVFERGSLASTTRWTAILTIVIRPPSNTDQLRNNPLGVFINAIDWSRELDSAAPTSVSPKGVH
Q

Sequences:

>Translated_241_residues
MLFKRPIQRYGKTPEPVTPYQKAAQLWDERIGSSRVQARNWRFMALGCLTLAAGLSGGLVWQSMQSRVVPYVVEVDGFGE
ARAVAPAIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVRQNWLSAYDFATDRAALFLNEYAKANDPFGQIGTRSVSVQV
TSVVRASDSSFQVKWAEQVFERGSLASTTRWTAILTIVIRPPSNTDQLRNNPLGVFINAIDWSRELDSAAPTSVSPKGVH
Q
>Mature_241_residues
MLFKRPIQRYGKTPEPVTPYQKAAQLWDERIGSSRVQARNWRFMALGCLTLAAGLSGGLVWQSMQSRVVPYVVEVDGFGE
ARAVAPAIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVRQNWLSAYDFATDRAALFLNEYAKANDPFGQIGTRSVSVQV
TSVVRASDSSFQVKWAEQVFERGSLASTTRWTAILTIVIRPPSNTDQLRNNPLGVFINAIDWSRELDSAAPTSVSPKGVH
Q

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26828; Mature: 26828

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFKRPIQRYGKTPEPVTPYQKAAQLWDERIGSSRVQARNWRFMALGCLTLAAGLSGGLV
CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCEEEEHHHHHHHHHCCCCCHH
WQSMQSRVVPYVVEVDGFGEARAVAPAIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVR
HHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEH
QNWLSAYDFATDRAALFLNEYAKANDPFGQIGTRSVSVQVTSVVRASDSSFQVKWAEQVF
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCEEEHHHHHHH
ERGSLASTTRWTAILTIVIRPPSNTDQLRNNPLGVFINAIDWSRELDSAAPTSVSPKGVH
HCCCCCCHHEEEEEEEEEEECCCCHHHHCCCCCEEEEEEECCHHHHCCCCCCCCCCCCCC
Q
C
>Mature Secondary Structure
MLFKRPIQRYGKTPEPVTPYQKAAQLWDERIGSSRVQARNWRFMALGCLTLAAGLSGGLV
CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCEEEEHHHHHHHHHCCCCCHH
WQSMQSRVVPYVVEVDGFGEARAVAPAIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVR
HHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEH
QNWLSAYDFATDRAALFLNEYAKANDPFGQIGTRSVSVQVTSVVRASDSSFQVKWAEQVF
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCEEEHHHHHHH
ERGSLASTTRWTAILTIVIRPPSNTDQLRNNPLGVFINAIDWSRELDSAAPTSVSPKGVH
HCCCCCCHHEEEEEEEEEEECCCCHHHHCCCCCEEEEEEECCHHHHCCCCCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]