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The map label for this gene is xerD [C]

Identifier: 13475333

GI number: 13475333

Start: 5202040

End: 5202894

Strand: Reverse

Name: xerD [C]

Synonym: mll6374

Alternate gene names: 13475333

Gene position: 5202894-5202040 (Counterclockwise)

Preceding gene: 13475334

Following gene: 13475323

Centisome position: 73.95

GC content: 61.87

Gene sequence:

>855_bases
ATGAGTGCCTCGAACGATCTGGCCGTGCTGATCGAGCGGTGGTTCACCGATCGGCTCATGCGACATCGAGGCGTAAGCTC
CAACACCATCGCCTCCTATCGCGACACCTTCCGGCTCCTGTTTGCATTCGCGCAGACACGCCTTGGCAGGTCTCCGTCGC
AGTTGACACTGCGGGATTTGGACGCGCCTTTCATCGGTGCATTCCTGGAGGACCTTGAGACACTGCGATCCGCCTCAGTG
AGGACCCGGAACCTCCGCCTCACGGCCATTCGGTCTTTCTTCAGATATGCGTCGTTCGAGGAGCCGGCCCATAGCGCCCA
GATTCAACGCGTGCTCGCGATCCCGAGCAAGCGATGCGACAAGCGACAGCTTCAGTTTCTCACCAGGCCCGAGATTGAAG
CGATCCTGGCCTGTCCGGATCGCAGCACATGGCTGGGACGGCGTGATCACACTCTGCTGTTGCTGGCCGCGCAAACGGGG
TTGCGGGTCTCGGAGATCATCGATCTCGACCGGGACTCGGTGATGCTGGGGCACGGTGCCCACGTGCGATGCGTTGGCAA
GGGCCGCAACGAGCGAAGTACGCCGCTCACCAAGGTTGCACAGCAAGCCCTTCGGGGCTGGCTCAACGAGCCCAGGAAGC
GGGGCGCAACGGCTCTCTTTCCGAACACGCACGGCGGCAAGCTGAGCGCCGACGGCGTGCAGGCGCTGCTGAACAAATAC
CCAAATAGAAGGGCGTCTCAAACCAAAAGGCACGGACATCAAACGCCATCAGAGCCTCGCCGCTACCCCCGTGGCGGAAG
GTTGCGTACAGACTTGCCGCACAGAACCCCAAGGCGAGTGAGCACGCGATGCTAA

Upstream 100 bases:

>100_bases
GCCACGCCAATGTTCGCGACACCTACTGGTATCTATCCGCCGCGCCGGAGCTAATGACCCATGCCGCGCGACTGCTGGAT
GAGCGGTGGGAGGTTCGCTC

Downstream 100 bases:

>100_bases
TGGCTATGTTGGGGGACGTCGTTTTTGTAGAAGACATTGTTCCATGGCCGAATTAGCCGTGCTGATGCTGCGCTTGCTTC
AGACACCGAACCGAGGTCGC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIGAFLEDLETLRSASV
RTRNLRLTAIRSFFRYASFEEPAHSAQIQRVLAIPSKRCDKRQLQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTG
LRVSEIIDLDRDSVMLGHGAHVRCVGKGRNERSTPLTKVAQQALRGWLNEPRKRGATALFPNTHGGKLSADGVQALLNKY
PNRRASQTKRHGHQTPSEPRRYPRGGRLRTDLPHRTPRRVSTRC

Sequences:

>Translated_284_residues
MSASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIGAFLEDLETLRSASV
RTRNLRLTAIRSFFRYASFEEPAHSAQIQRVLAIPSKRCDKRQLQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTG
LRVSEIIDLDRDSVMLGHGAHVRCVGKGRNERSTPLTKVAQQALRGWLNEPRKRGATALFPNTHGGKLSADGVQALLNKY
PNRRASQTKRHGHQTPSEPRRYPRGGRLRTDLPHRTPRRVSTRC
>Mature_283_residues
SASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIGAFLEDLETLRSASVR
TRNLRLTAIRSFFRYASFEEPAHSAQIQRVLAIPSKRCDKRQLQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGL
RVSEIIDLDRDSVMLGHGAHVRCVGKGRNERSTPLTKVAQQALRGWLNEPRKRGATALFPNTHGGKLSADGVQALLNKYP
NRRASQTKRHGHQTPSEPRRYPRGGRLRTDLPHRTPRRVSTRC

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=240, Percent_Identity=28.3333333333333, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32294; Mature: 32163

Theoretical pI: Translated: 11.91; Mature: 11.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
DAPFIGAFLEDLETLRSASVRTRNLRLTAIRSFFRYASFEEPAHSAQIQRVLAIPSKRCD
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
KRQLQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRDSVMLGHGA
HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCEEECCCC
HVRCVGKGRNERSTPLTKVAQQALRGWLNEPRKRGATALFPNTHGGKLSADGVQALLNKY
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHC
PNRRASQTKRHGHQTPSEPRRYPRGGRLRTDLPHRTPRRVSTRC
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDL
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
DAPFIGAFLEDLETLRSASVRTRNLRLTAIRSFFRYASFEEPAHSAQIQRVLAIPSKRCD
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
KRQLQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRDSVMLGHGA
HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCEEECCCC
HVRCVGKGRNERSTPLTKVAQQALRGWLNEPRKRGATALFPNTHGGKLSADGVQALLNKY
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHC
PNRRASQTKRHGHQTPSEPRRYPRGGRLRTDLPHRTPRRVSTRC
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]