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The map label for this gene is 13475245

Identifier: 13475245

GI number: 13475245

Start: 5088718

End: 5090325

Strand: Direct

Name: 13475245

Synonym: mlr6273

Alternate gene names: NA

Gene position: 5088718-5090325 (Clockwise)

Preceding gene: 13475239

Following gene: 13475246

Centisome position: 72.32

GC content: 59.58

Gene sequence:

>1608_bases
ATGGGCGACGACACCAATGATGATTACGGAGACCGAGCGCGTTGGAACGAGGCGTGCCGGCGCGAAGAGGCAATCCGCAA
GCTCGTGGAGCGCTATCCAAAAGGTCTGAGCGGGCAGGCTGTAGCGGATCTGGCGTGGGAACTGGACCTCAGCCGGGCCA
CCCTCTACAGGATGATCAGGCTGTTTCGAGCGGGTGGCACTGTAAGTTCACTGATGGACCGAAAGCGCGGTCGGCGCCAG
GGACATCGCGCCCTCAACAAAGATCGAGAAGCCCTCGTGCGACGAACGATTGAAGGCTTTTATCTCAAGCCGACACGCCC
GTCCTTCGCGCAGCTGGTTCGCCAGGTCCAAATCGCCTGCGCAGCGGCCGGCCTTACTCCACCAAACTGGCGCACTATCA
AATCCCGGGTTGAAGAGGTCGATCTACGGGTGAGGGGGCGTAAGCGCGGCGAGAGCGAGGTCGTCAAAGCTACAACGGCC
ACGCCAGGTGCCCTTTCGGCGTCGCGGCCGCTTGAGCTTGTTCAAATCGATCATACCAAAGTTGACGTATTCGTTGTCGA
CGAAGACACGCGTCAGCCGCTCGGACGGCCCTGGCTGACACTAGCGTTGGACATCTTTTCTCGGATGGTGACGGGCCTCT
ATCTGACCATGGAGGCGCCCTCGCGATTATCGACAAGCCTATGCATACTGCACTCCGTGTTCGACAAGACCCCATGGTTG
CAGGAGAGGGGTATCCATGAAGCGTGGCCAGTGGCCGGTTTGCCGGGAACGATACATGTCGACAACGGCGCGGATTTTCG
TAGTCATGCATTCGAACGTGCTTGCCGGGACAACGGCATACAGATCGATTGGCGTCCGCCGGGGACGCCCCATTTCGGCG
GCCACATCGAACGGTTGATTGGCACGCAGATGGGCGCGGTTCACCTGCTGCCAGGATCGACCTCGAGCAACATCGAGGAA
CGGCGCGAGTACGATGCCAAACGCCATGCGACACTGACGCTTCGAGAGCTTGAGCGCTACATCGCACTCGAGATCGTTGG
GCAATACCATCATGCTATCCATGGCGCACTCCGTCGGCCACCGATTGCGGTCTGGCGGCAGCACGAGAGCGAGTTGGTGT
TGCGCCTGCCGAACGATCGTATGCAATTCTGGATCTCCTTCCTGCCGGAGGCAGAGAGAACGTTGCGCCCGACCGGCATC
CATCTTTTCAACATCCGCTACTGGTCTCCCGCCTTCGCCGCCGATATCGGACGGGCCAAGGCCCGCCTGATTGTGAAATA
CGACCCCCGCGATTTGTCGCGCGTTTTTGTTAGGCGTCACTCCGGCAGCTTTGTTGAGGCTCGCTATGCCGATGTGACAC
TCGCGCCCATTACGCTGTGGGAGGCGCAGGCTGCCCGGCGCAAACTCAACGCCCAGGGCAAACGCGAAATTGACATGCAC
GTCCTTGTCCGTACTGCGCTTTCGCAGCGCGAACTGATCGAGGAGGCGAAACACAAGACACAAGGGCGTCTGCGGCTTGC
GAAAACGAATGTGGATGACGATGAAGTGGGATCGCTTCGAGGCGTCGATTCAAGCAAACCTGTTCCCTCCGTTGAAGATC
TGGATTGA

Upstream 100 bases:

>100_bases
AATTGAGAATTTGCATTTGATTTGAGATTCGCGCTTGGCCCGCTGCAGTAATTGTGAGATTCTGACGGCCTAACGTTAGC
TTGAATTGTTCGCAGGCGGC

Downstream 100 bases:

>100_bases
GCCCCTTTGAGCACGGATAACGTCCATCTGACGCAGGCGGCCAAAGACCTCCTAGGCGAGCCTGATATTGTGCGAGTTCG
CGCAATTCAGGCTCGGCGCT

Product: transposase

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:

>535_residues
MGDDTNDDYGDRARWNEACRREEAIRKLVERYPKGLSGQAVADLAWELDLSRATLYRMIRLFRAGGTVSSLMDRKRGRRQ
GHRALNKDREALVRRTIEGFYLKPTRPSFAQLVRQVQIACAAAGLTPPNWRTIKSRVEEVDLRVRGRKRGESEVVKATTA
TPGALSASRPLELVQIDHTKVDVFVVDEDTRQPLGRPWLTLALDIFSRMVTGLYLTMEAPSRLSTSLCILHSVFDKTPWL
QERGIHEAWPVAGLPGTIHVDNGADFRSHAFERACRDNGIQIDWRPPGTPHFGGHIERLIGTQMGAVHLLPGSTSSNIEE
RREYDAKRHATLTLRELERYIALEIVGQYHHAIHGALRRPPIAVWRQHESELVLRLPNDRMQFWISFLPEAERTLRPTGI
HLFNIRYWSPAFAADIGRAKARLIVKYDPRDLSRVFVRRHSGSFVEARYADVTLAPITLWEAQAARRKLNAQGKREIDMH
VLVRTALSQRELIEEAKHKTQGRLRLAKTNVDDDEVGSLRGVDSSKPVPSVEDLD

Sequences:

>Translated_535_residues
MGDDTNDDYGDRARWNEACRREEAIRKLVERYPKGLSGQAVADLAWELDLSRATLYRMIRLFRAGGTVSSLMDRKRGRRQ
GHRALNKDREALVRRTIEGFYLKPTRPSFAQLVRQVQIACAAAGLTPPNWRTIKSRVEEVDLRVRGRKRGESEVVKATTA
TPGALSASRPLELVQIDHTKVDVFVVDEDTRQPLGRPWLTLALDIFSRMVTGLYLTMEAPSRLSTSLCILHSVFDKTPWL
QERGIHEAWPVAGLPGTIHVDNGADFRSHAFERACRDNGIQIDWRPPGTPHFGGHIERLIGTQMGAVHLLPGSTSSNIEE
RREYDAKRHATLTLRELERYIALEIVGQYHHAIHGALRRPPIAVWRQHESELVLRLPNDRMQFWISFLPEAERTLRPTGI
HLFNIRYWSPAFAADIGRAKARLIVKYDPRDLSRVFVRRHSGSFVEARYADVTLAPITLWEAQAARRKLNAQGKREIDMH
VLVRTALSQRELIEEAKHKTQGRLRLAKTNVDDDEVGSLRGVDSSKPVPSVEDLD
>Mature_534_residues
GDDTNDDYGDRARWNEACRREEAIRKLVERYPKGLSGQAVADLAWELDLSRATLYRMIRLFRAGGTVSSLMDRKRGRRQG
HRALNKDREALVRRTIEGFYLKPTRPSFAQLVRQVQIACAAAGLTPPNWRTIKSRVEEVDLRVRGRKRGESEVVKATTAT
PGALSASRPLELVQIDHTKVDVFVVDEDTRQPLGRPWLTLALDIFSRMVTGLYLTMEAPSRLSTSLCILHSVFDKTPWLQ
ERGIHEAWPVAGLPGTIHVDNGADFRSHAFERACRDNGIQIDWRPPGTPHFGGHIERLIGTQMGAVHLLPGSTSSNIEER
REYDAKRHATLTLRELERYIALEIVGQYHHAIHGALRRPPIAVWRQHESELVLRLPNDRMQFWISFLPEAERTLRPTGIH
LFNIRYWSPAFAADIGRAKARLIVKYDPRDLSRVFVRRHSGSFVEARYADVTLAPITLWEAQAARRKLNAQGKREIDMHV
LVRTALSQRELIEEAKHKTQGRLRLAKTNVDDDEVGSLRGVDSSKPVPSVEDLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 60862; Mature: 60731

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDDTNDDYGDRARWNEACRREEAIRKLVERYPKGLSGQAVADLAWELDLSRATLYRMIR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHH
LFRAGGTVSSLMDRKRGRRQGHRALNKDREALVRRTIEGFYLKPTRPSFAQLVRQVQIAC
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHH
AAAGLTPPNWRTIKSRVEEVDLRVRGRKRGESEVVKATTATPGALSASRPLELVQIDHTK
HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCCCCCCCCEEEEEECCCE
VDVFVVDEDTRQPLGRPWLTLALDIFSRMVTGLYLTMEAPSRLSTSLCILHSVFDKTPWL
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCCCH
QERGIHEAWPVAGLPGTIHVDNGADFRSHAFERACRDNGIQIDWRPPGTPHFGGHIERLI
HHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
GTQMGAVHLLPGSTSSNIEERREYDAKRHATLTLRELERYIALEIVGQYHHAIHGALRRP
HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIAVWRQHESELVLRLPNDRMQFWISFLPEAERTLRPTGIHLFNIRYWSPAFAADIGRAK
CHHHHHCCCCCEEEECCCHHHHHHHHHCCCHHHHCCCCCEEEEEEEECCCHHHHHHCCCC
ARLIVKYDPRDLSRVFVRRHSGSFVEARYADVTLAPITLWEAQAARRKLNAQGKREIDMH
EEEEEEECCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHHHHCCCCCCCHHHH
VLVRTALSQRELIEEAKHKTQGRLRLAKTNVDDDEVGSLRGVDSSKPVPSVEDLD
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GDDTNDDYGDRARWNEACRREEAIRKLVERYPKGLSGQAVADLAWELDLSRATLYRMIR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHH
LFRAGGTVSSLMDRKRGRRQGHRALNKDREALVRRTIEGFYLKPTRPSFAQLVRQVQIAC
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHH
AAAGLTPPNWRTIKSRVEEVDLRVRGRKRGESEVVKATTATPGALSASRPLELVQIDHTK
HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCCCCCCCCEEEEEECCCE
VDVFVVDEDTRQPLGRPWLTLALDIFSRMVTGLYLTMEAPSRLSTSLCILHSVFDKTPWL
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCCCH
QERGIHEAWPVAGLPGTIHVDNGADFRSHAFERACRDNGIQIDWRPPGTPHFGGHIERLI
HHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
GTQMGAVHLLPGSTSSNIEERREYDAKRHATLTLRELERYIALEIVGQYHHAIHGALRRP
HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIAVWRQHESELVLRLPNDRMQFWISFLPEAERTLRPTGIHLFNIRYWSPAFAADIGRAK
CHHHHHCCCCCEEEECCCHHHHHHHHHCCCHHHHCCCCCEEEEEEEECCCHHHHHHCCCC
ARLIVKYDPRDLSRVFVRRHSGSFVEARYADVTLAPITLWEAQAARRKLNAQGKREIDMH
EEEEEEECCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHHHHCCCCCCCHHHH
VLVRTALSQRELIEEAKHKTQGRLRLAKTNVDDDEVGSLRGVDSSKPVPSVEDLD
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]