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The map label for this gene is nodD1 [H]

Identifier: 13475165

GI number: 13475165

Start: 5002521

End: 5003426

Strand: Direct

Name: nodD1 [H]

Synonym: mlr6182

Alternate gene names: 13475165

Gene position: 5002521-5003426 (Clockwise)

Preceding gene: 13475164

Following gene: 13475167

Centisome position: 71.1

GC content: 57.06

Gene sequence:

>906_bases
ATGCGTTTCAAAGGCCTTGATCTGAACCTTCTCGTCGTGCTCGACGCACTGCTGACCGCGCGCAACCTCACGGCCGCGGC
AAGCAGCATCAACCTTAGTCAGCCGGCCATGAGCGCGGCCGTCGCCCGGCTGCGCAACTATTTCAACGATGAACTGTTTA
CGATGAGCGGCCGCGAACGCGTTCTAACCCCGCGTGCGGAAACACTCGCCCCCGCTGTTCGTGGCGCACTCTTGCACATC
CAATGCTCGATTATTTCTTGGGATCCGTTTAATCCGGCTCAATCCGATCGCCGCTTCAGGATCATTCTTTCCGATTTCGC
CACACTCGTGTTTTTTGAAAAGGTCGTGGAGCGGGTTGCACGCGAAGCACCCGCCGTCAGCTTCGAATTGCGGCCGCTCG
ACAACGACCCCGATGAGCTTCTCCGGCGCGGTGACGTCGATTTTGTGATTCTTCCGGAATTTTTCATGTCGAGCGCCCAT
CCAAGAGCGGCGCTGTTCGACGAGACATTCGTGTGCGTGGGCTGCCCCACGAACAAGCAGTTGCCACGTCAGCTTACATT
CGAGAGATACGTGTCGATGAAACACATTGCGTTCAGGGTCGGCGGTGCCCAGATGCCATCCATCGAGGAACAGTTTTTGC
TTGAGCATGGTCTCAAGAGACGTGTTGAGATCGTCGTACAGGCCTTTAGCATGATCCCGCCGATGGTCTCAGGCACAGCT
CGGATAGCGACCATGCCCTTCCGGCTGGTTCAGCATTTCAAAAAAACCTTCCCCTTGCGGATCATCGAACTTCCGCGGCC
ACTACCCACGTTCACCGAGGCCGTCCAATGGCCCACCCTCCACAACAGTGATCCGGCAAGCATCTGGATGCGGCAGATAA
TGTTGCAGGAGGCATCCCGCATGTGA

Upstream 100 bases:

>100_bases
CGCGGGCGGCAGGTCGGGACACAACACCTCTGAGTGGGACCGTAAACGAGCGCCCATAATGGTCACGATGACAAACAACC
ACGTTACGGACAGATGAGGC

Downstream 100 bases:

>100_bases
AGTCGCGGGCACTCCTGGTCTCAGTCTAGATTTACTCAGCGCCTCATACGGGTGCGAACCGGCGTGCAAAATTGGGTCTG
ACGCACATTCGATGATTTTG

Product: transcriptional regulator, nudulation protein nodD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRFKGLDLNLLVVLDALLTARNLTAAASSINLSQPAMSAAVARLRNYFNDELFTMSGRERVLTPRAETLAPAVRGALLHI
QCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVAREAPAVSFELRPLDNDPDELLRRGDVDFVILPEFFMSSAH
PRAALFDETFVCVGCPTNKQLPRQLTFERYVSMKHIAFRVGGAQMPSIEEQFLLEHGLKRRVEIVVQAFSMIPPMVSGTA
RIATMPFRLVQHFKKTFPLRIIELPRPLPTFTEAVQWPTLHNSDPASIWMRQIMLQEASRM

Sequences:

>Translated_301_residues
MRFKGLDLNLLVVLDALLTARNLTAAASSINLSQPAMSAAVARLRNYFNDELFTMSGRERVLTPRAETLAPAVRGALLHI
QCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVAREAPAVSFELRPLDNDPDELLRRGDVDFVILPEFFMSSAH
PRAALFDETFVCVGCPTNKQLPRQLTFERYVSMKHIAFRVGGAQMPSIEEQFLLEHGLKRRVEIVVQAFSMIPPMVSGTA
RIATMPFRLVQHFKKTFPLRIIELPRPLPTFTEAVQWPTLHNSDPASIWMRQIMLQEASRM
>Mature_301_residues
MRFKGLDLNLLVVLDALLTARNLTAAASSINLSQPAMSAAVARLRNYFNDELFTMSGRERVLTPRAETLAPAVRGALLHI
QCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVAREAPAVSFELRPLDNDPDELLRRGDVDFVILPEFFMSSAH
PRAALFDETFVCVGCPTNKQLPRQLTFERYVSMKHIAFRVGGAQMPSIEEQFLLEHGLKRRVEIVVQAFSMIPPMVSGTA
RIATMPFRLVQHFKKTFPLRIIELPRPLPTFTEAVQWPTLHNSDPASIWMRQIMLQEASRM

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavenoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=305, Percent_Identity=27.2131147540984, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34224; Mature: 34224

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKGLDLNLLVVLDALLTARNLTAAASSINLSQPAMSAAVARLRNYFNDELFTMSGRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCE
VLTPRAETLAPAVRGALLHIQCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVA
ECCCCHHHHHHHHHCEEEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
REAPAVSFELRPLDNDPDELLRRGDVDFVILPEFFMSSAHPRAALFDETFVCVGCPTNKQ
HHCCCCEEEEECCCCCHHHHHHCCCCCEEECCHHHCCCCCCCCEECCCCEEEEECCCCCC
LPRQLTFERYVSMKHIAFRVGGAQMPSIEEQFLLEHGLKRRVEIVVQAFSMIPPMVSGTA
CHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCH
RIATMPFRLVQHFKKTFPLRIIELPRPLPTFTEAVQWPTLHNSDPASIWMRQIMLQEASR
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
M
C
>Mature Secondary Structure
MRFKGLDLNLLVVLDALLTARNLTAAASSINLSQPAMSAAVARLRNYFNDELFTMSGRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCE
VLTPRAETLAPAVRGALLHIQCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVA
ECCCCHHHHHHHHHCEEEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
REAPAVSFELRPLDNDPDELLRRGDVDFVILPEFFMSSAHPRAALFDETFVCVGCPTNKQ
HHCCCCEEEEECCCCCHHHHHHCCCCCEEECCHHHCCCCCCCCEECCCCEEEEECCCCCC
LPRQLTFERYVSMKHIAFRVGGAQMPSIEEQFLLEHGLKRRVEIVVQAFSMIPPMVSGTA
CHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCH
RIATMPFRLVQHFKKTFPLRIIELPRPLPTFTEAVQWPTLHNSDPASIWMRQIMLQEASR
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
M
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]