Click here to switch to the map view.

The map label for this gene is nodD1

Identifier: 13475163

GI number: 13475163

Start: 4999504

End: 5000448

Strand: Reverse

Name: nodD1

Synonym: mll6179

Alternate gene names: 13475163

Gene position: 5000448-4999504 (Counterclockwise)

Preceding gene: 13475166

Following gene: 13475155

Centisome position: 71.07

GC content: 57.46

Gene sequence:

>945_bases
ATGCGCTTCAAGGGCCTTGATCTGAACCTTCTCGTCGTGCTCGACGCACTGCTGACCGAGCGGACCCTCACGGCGGCGGC
AAGCAGCATCAACCTTAGTCAGCCGGCCATGAGCGCGGCCGTCGCCCGGCTGCGCGACTATTTCAACGATGAACTGTTTA
CGACGAGCGGCCGCGAACGTGTTCTAACCCCGCGTGCGGAAACACTCGCCCCCGCAGTTCGCAGCGCACTCTTGCAAATC
CAGTGCTCGATTATCTCTTGGGATCCGTTTAATCCGGCTCAATCCGATCGCCGTTTCAGGATCATTCTTTCCGATTTCGC
CACACTCGTGTTTTTTGAAAAGGTCGTGGAGCGGGTTGCACGCGAAGCACCCGCCGTCAGCTTCGAATTGTTGCCTATCG
ACGACGACCCCGATGAGCTTCTCCGGCGCGGTGACGTCGATTTTCTGATTTTTCCAGAATTGTTCATGTCAAGTGCCCAT
CCAAGAGCGGCGCTGTTCGACGAGACGCTCGTGTGCGTGGGCTGCTCCACGAACAAGCAGCTGCCACGGCAGCTTACATT
CGAGAGATACATGTCGATGAGGCACGTTGCGGTCAAGTTCGGGCGGACGCTGAAGCCCTCCATCGAGGAACAGTTTTTTC
TTGAGCATGGTCTCAAGAGACGTGTCGAGATCGTTGTGCAGGCCTTTAGCATGATCCCGCCGATGGTCTCAGGCACAGCT
CGTATAGCGACCATGCCCTTCCGGCTGGTTCAGCATTTCAAAAAAACCTTCCCCCTGCGGATCATCGAACTTCCGCTGCC
ACTACCCACGTTCACCGAGGCCGTTCAATGGCCCGCCCTTCACAACAGTGATCCGGCAAGCATCTGGCTGCGAGAGATAT
TGCTACAGGAGGCGTCTCGAATGACTTCTCCGGGGGACGCCAAAAGGCGCCCCAGGCAGCCCTAA

Upstream 100 bases:

>100_bases
CGGGCGCATGTCAAGTGCGGTCATCTATGCAGCGCCCTGGAAGTTTGGTAAAATCGATTGTTTAGATCGCGAGCATCCAC
GCTATGGATAAGTGAAAGCC

Downstream 100 bases:

>100_bases
TTTACTCCCGCGTCTCACGCCGGCACTCGCGTCAATAGCCCGTGTCGGAAGAGAGCGACGCTCGCGGCAAGTGCGCCTGC
GAGGTCGTCCAGCGGGTGGG

Product: transcriptional regulator, nudulation protein nodD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRFKGLDLNLLVVLDALLTERTLTAAASSINLSQPAMSAAVARLRDYFNDELFTTSGRERVLTPRAETLAPAVRSALLQI
QCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVAREAPAVSFELLPIDDDPDELLRRGDVDFLIFPELFMSSAH
PRAALFDETLVCVGCSTNKQLPRQLTFERYMSMRHVAVKFGRTLKPSIEEQFFLEHGLKRRVEIVVQAFSMIPPMVSGTA
RIATMPFRLVQHFKKTFPLRIIELPLPLPTFTEAVQWPALHNSDPASIWLREILLQEASRMTSPGDAKRRPRQP

Sequences:

>Translated_314_residues
MRFKGLDLNLLVVLDALLTERTLTAAASSINLSQPAMSAAVARLRDYFNDELFTTSGRERVLTPRAETLAPAVRSALLQI
QCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVAREAPAVSFELLPIDDDPDELLRRGDVDFLIFPELFMSSAH
PRAALFDETLVCVGCSTNKQLPRQLTFERYMSMRHVAVKFGRTLKPSIEEQFFLEHGLKRRVEIVVQAFSMIPPMVSGTA
RIATMPFRLVQHFKKTFPLRIIELPLPLPTFTEAVQWPALHNSDPASIWLREILLQEASRMTSPGDAKRRPRQP
>Mature_314_residues
MRFKGLDLNLLVVLDALLTERTLTAAASSINLSQPAMSAAVARLRDYFNDELFTTSGRERVLTPRAETLAPAVRSALLQI
QCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVAREAPAVSFELLPIDDDPDELLRRGDVDFLIFPELFMSSAH
PRAALFDETLVCVGCSTNKQLPRQLTFERYMSMRHVAVKFGRTLKPSIEEQFFLEHGLKRRVEIVVQAFSMIPPMVSGTA
RIATMPFRLVQHFKKTFPLRIIELPLPLPTFTEAVQWPALHNSDPASIWLREILLQEASRMTSPGDAKRRPRQP

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavenoids as inducers

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081684, Length=302, Percent_Identity=27.8145695364238, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NODD1_RHILO (Q52838)

Other databases:

- EMBL:   BA000012
- EMBL:   L06241
- RefSeq:   NP_106727.1
- ProteinModelPortal:   Q52838
- SMR:   Q52838
- GeneID:   1229382
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll6179
- NMPDR:   fig|266835.1.peg.4828
- HOGENOM:   HBG682110
- OMA:   FERYMSM
- ProtClustDB:   CLSK864448
- GO:   GO:0009877
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 35692; Mature: 35692

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKGLDLNLLVVLDALLTERTLTAAASSINLSQPAMSAAVARLRDYFNDELFTTSGRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCCE
VLTPRAETLAPAVRSALLQIQCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVA
EECCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
REAPAVSFELLPIDDDPDELLRRGDVDFLIFPELFMSSAHPRAALFDETLVCVGCSTNKQ
HHCCCCEEEEEECCCCHHHHHHCCCCCEEECHHHHHCCCCCCHHHHCCCEEEEECCCCCC
LPRQLTFERYMSMRHVAVKFGRTLKPSIEEQFFLEHGLKRRVEIVVQAFSMIPPMVSGTA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCH
RIATMPFRLVQHFKKTFPLRIIELPLPLPTFTEAVQWPALHNSDPASIWLREILLQEASR
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
MTSPGDAKRRPRQP
CCCCCCCCCCCCCC
>Mature Secondary Structure
MRFKGLDLNLLVVLDALLTERTLTAAASSINLSQPAMSAAVARLRDYFNDELFTTSGRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCCE
VLTPRAETLAPAVRSALLQIQCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVA
EECCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
REAPAVSFELLPIDDDPDELLRRGDVDFLIFPELFMSSAHPRAALFDETLVCVGCSTNKQ
HHCCCCEEEEEECCCCHHHHHHCCCCCEEECHHHHHCCCCCCHHHHCCCEEEEECCCCCC
LPRQLTFERYMSMRHVAVKFGRTLKPSIEEQFFLEHGLKRRVEIVVQAFSMIPPMVSGTA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCH
RIATMPFRLVQHFKKTFPLRIIELPLPLPTFTEAVQWPALHNSDPASIWLREILLQEASR
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
MTSPGDAKRRPRQP
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088