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The map label for this gene is nodB

Identifier: 13475158

GI number: 13475158

Start: 4995963

End: 4996622

Strand: Direct

Name: nodB

Synonym: mlr6175

Alternate gene names: 13475158

Gene position: 4995963-4996622 (Clockwise)

Preceding gene: 13475157

Following gene: 13475159

Centisome position: 71.01

GC content: 58.33

Gene sequence:

>660_bases
ATGAGACGTCTCGATGACAGATGGAAGGTGCAGAGTGAATGCGCTGACGGCACCGGGCGTCGAAGCGTTTATCTGACGTT
TGACGACGGTCCCAATCCATGTTTCACACCACAGATACTCGATGTGCTGGCGCAAAATCGGGTGCCAGCGACATTCTTCG
TCATTGGTGCTTACGCCGCAGAGCATCCGGAACTCATCCAGCGAATGATCGCAGAAGGGCATGAGGTAGGCAACCACACG
ATGTCTCATCCGGACCTGTCCAAATGCGGTTTGGGCGAAGTGCAACGTGAAGTATTTGAGGCGAACCAGGCCATCATGCT
GGCATGCCCGCAGGCCTCGATCCGCTACATTCGCGCGCCATACGGCGCCTGGAGCGAAGAAGTGTTCACTGCCTCAGAGA
TCGCGGGGCTGGCGGCCCTTCATTGGTCGATCGACCCAAGAGACTGGTCGCGCCCCGGCACCGACGCGATCGTCGATGCA
GTGCTCGCCTCGGTACGCCCCGGCGCAATCGTGCTCTTGCACGACGGATGCCCTCCCGACGAGTCGACACGGAGCACTCA
AGCCAGTCTGCGCAACCAGACCGTTATGGCGCTGTCCAATCTGATTCCTGCATTAGATGCCTGCGGATATGAAATTCGCT
CGCTTCCAGAACATCACTGA

Upstream 100 bases:

>100_bases
AAGCTCCCCCCGATAGCGTAGGCCCCTACCTCAAGGATCGGGGTTATGCCGATTGCGAATGGCCGACCGGTACAACAATT
GACCGCAAGGGTTCGCAGCT

Downstream 100 bases:

>100_bases
AATGCGAGATCCCATGGACCTGCTTTCCCAGCCAGTACCTGTGTGGTCTCTCTTATGAAGGCTTACAGGCCGTTTACGCC
CTGCGAACAAGCACTTCGTC

Product: chitooligosaccharide deacetylase, nodulation protein nodB

Products: NA

Alternate protein names: Nodulation protein B

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRRLDDRWKVQSECADGTGRRSVYLTFDDGPNPCFTPQILDVLAQNRVPATFFVIGAYAAEHPELIQRMIAEGHEVGNHT
MSHPDLSKCGLGEVQREVFEANQAIMLACPQASIRYIRAPYGAWSEEVFTASEIAGLAALHWSIDPRDWSRPGTDAIVDA
VLASVRPGAIVLLHDGCPPDESTRSTQASLRNQTVMALSNLIPALDACGYEIRSLPEHH

Sequences:

>Translated_219_residues
MRRLDDRWKVQSECADGTGRRSVYLTFDDGPNPCFTPQILDVLAQNRVPATFFVIGAYAAEHPELIQRMIAEGHEVGNHT
MSHPDLSKCGLGEVQREVFEANQAIMLACPQASIRYIRAPYGAWSEEVFTASEIAGLAALHWSIDPRDWSRPGTDAIVDA
VLASVRPGAIVLLHDGCPPDESTRSTQASLRNQTVMALSNLIPALDACGYEIRSLPEHH
>Mature_219_residues
MRRLDDRWKVQSECADGTGRRSVYLTFDDGPNPCFTPQILDVLAQNRVPATFFVIGAYAAEHPELIQRMIAEGHEVGNHT
MSHPDLSKCGLGEVQREVFEANQAIMLACPQASIRYIRAPYGAWSEEVFTASEIAGLAALHWSIDPRDWSRPGTDAIVDA
VLASVRPGAIVLLHDGCPPDESTRSTQASLRNQTVMALSNLIPALDACGYEIRSLPEHH

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=152, Percent_Identity=32.8947368421053, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6323338, Length=158, Percent_Identity=30.379746835443, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODB_RHILO (Q52845)

Other databases:

- EMBL:   BA000012
- EMBL:   X65620
- PIR:   S21412
- RefSeq:   NP_106722.1
- ProteinModelPortal:   Q52845
- SMR:   Q52845
- GeneID:   1229377
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr6175
- NMPDR:   fig|266835.1.peg.4823
- HOGENOM:   HBG751163
- OMA:   RAPYGVW
- ProtClustDB:   CLSK864446
- GO:   GO:0005737
- GO:   GO:0009877
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 24091; Mature: 24091

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLDDRWKVQSECADGTGRRSVYLTFDDGPNPCFTPQILDVLAQNRVPATFFVIGAYAA
CCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHC
EHPELIQRMIAEGHEVGNHTMSHPDLSKCGLGEVQREVFEANQAIMLACPQASIRYIRAP
CCHHHHHHHHHCCHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCEEEEECCCHHHHEEECC
YGAWSEEVFTASEIAGLAALHWSIDPRDWSRPGTDAIVDAVLASVRPGAIVLLHDGCPPD
CCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC
ESTRSTQASLRNQTVMALSNLIPALDACGYEIRSLPEHH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
>Mature Secondary Structure
MRRLDDRWKVQSECADGTGRRSVYLTFDDGPNPCFTPQILDVLAQNRVPATFFVIGAYAA
CCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHC
EHPELIQRMIAEGHEVGNHTMSHPDLSKCGLGEVQREVFEANQAIMLACPQASIRYIRAP
CCHHHHHHHHHCCHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCEEEEECCCHHHHEEECC
YGAWSEEVFTASEIAGLAALHWSIDPRDWSRPGTDAIVDAVLASVRPGAIVLLHDGCPPD
CCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC
ESTRSTQASLRNQTVMALSNLIPALDACGYEIRSLPEHH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088