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The map label for this gene is nodJ [H]

Identifier: 13475152

GI number: 13475152

Start: 4989941

End: 4990729

Strand: Direct

Name: nodJ [H]

Synonym: mlr6166

Alternate gene names: 13475152

Gene position: 4989941-4990729 (Clockwise)

Preceding gene: 13475151

Following gene: 13475153

Centisome position: 70.92

GC content: 59.06

Gene sequence:

>789_bases
ATGATTGAAGGTTTTGCGGCGGCGCTGCCGGCCAATGCGTGGAACTGGGTTGCGGTATGGCGACGCAACTATCTGGCATG
GAAGAAAGTCGCACTCGTGTCGCTTCTCGGTAACCTCGCCGATCCTATGATCTACCTTTTCGGCCTAGGCACCGGCCTCG
GCATAATGGTCGGCCGCGTCGACGGTGCGTCGTATATCGCCTTTTTGGCGGCCGGCATGGTCGCGGTAAGTGCGATGACC
GCCTCTACCCTGGAAACATTGTACGCGGCTTTCGCTCGCATGCATTCTCAACGCACATGGGAAGCCATGCTGTATACGCA
CGTTACCCTCGGCGACATCGTTCTGGGTGAACTGGCGTGGGCAGCCACCAAGGCCTTCATGGCCGGTACGGCTATTACCA
TCGTCACCGCAACCTTGGGCTATGCCGCCTGGCCGTCCGTCCTCTATGCGCTGCCAATCATTGCTCTGACAGGGTGCGTA
TTTGCGAGCCTCGCGATGATCGTCACCGCACTTTCGCCCAGCTACGATTACTTCGTGTTTTACCAGACGCTTGTCCTCAC
ACCTATGCTGTTCCTGTCGGGCGCCGTTTTCCCATTGAACCAGCTGCCTGGCGCCTTTCAGCAGATAGCGCGATGCATGC
CGCTGTCACATGCGATCGACCTCATTCGTCCGGTTATGCTTGATCGCCCGATCAGCGGCATCGCCCTGCACGTCGGTGTG
CTCGGCCTGTACGCGCTGTTGCCATTCTTCCTCTCGATGGCGCTGTTGCGCCGCCGACTAATGCGCTGA

Upstream 100 bases:

>100_bases
GCAACTGCAGGGGCGAGCAGGTCTGCGTCTTCTTCTGCGTCCAGCCAATCTCGAGGATGTTTTCTTGCGGCTGACCGGGC
GCGAGATGGAGGAGTGAGCG

Downstream 100 bases:

>100_bases
CGAAAGAGAGTGAGATAAACAATGCGCTACGGACTTCGTGCTGCAAATAAAAACGACATCGCCAACGCAAATCGGCATCC
AACCCAGGGTCTTCGTGGCA

Product: nodulation protein nodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIEGFAAALPANAWNWVAVWRRNYLAWKKVALVSLLGNLADPMIYLFGLGTGLGIMVGRVDGASYIAFLAAGMVAVSAMT
ASTLETLYAAFARMHSQRTWEAMLYTHVTLGDIVLGELAWAATKAFMAGTAITIVTATLGYAAWPSVLYALPIIALTGCV
FASLAMIVTALSPSYDYFVFYQTLVLTPMLFLSGAVFPLNQLPGAFQQIARCMPLSHAIDLIRPVMLDRPISGIALHVGV
LGLYALLPFFLSMALLRRRLMR

Sequences:

>Translated_262_residues
MIEGFAAALPANAWNWVAVWRRNYLAWKKVALVSLLGNLADPMIYLFGLGTGLGIMVGRVDGASYIAFLAAGMVAVSAMT
ASTLETLYAAFARMHSQRTWEAMLYTHVTLGDIVLGELAWAATKAFMAGTAITIVTATLGYAAWPSVLYALPIIALTGCV
FASLAMIVTALSPSYDYFVFYQTLVLTPMLFLSGAVFPLNQLPGAFQQIARCMPLSHAIDLIRPVMLDRPISGIALHVGV
LGLYALLPFFLSMALLRRRLMR
>Mature_262_residues
MIEGFAAALPANAWNWVAVWRRNYLAWKKVALVSLLGNLADPMIYLFGLGTGLGIMVGRVDGASYIAFLAAGMVAVSAMT
ASTLETLYAAFARMHSQRTWEAMLYTHVTLGDIVLGELAWAATKAFMAGTAITIVTATLGYAAWPSVLYALPIIALTGCV
FASLAMIVTALSPSYDYFVFYQTLVLTPMLFLSGAVFPLNQLPGAFQQIARCMPLSHAIDLIRPVMLDRPISGIALHVGV
LGLYALLPFFLSMALLRRRLMR

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28418; Mature: 28418

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]