| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is oppD [H]
Identifier: 13475079
GI number: 13475079
Start: 4922297
End: 4923304
Strand: Direct
Name: oppD [H]
Synonym: mlr6085
Alternate gene names: 13475079
Gene position: 4922297-4923304 (Clockwise)
Preceding gene: 13475078
Following gene: 13475080
Centisome position: 69.96
GC content: 60.91
Gene sequence:
>1008_bases ATGACAAACTCCTCTCGAGACAAGCCGTCGGTTTTGGAAGTCGACGGTCTCGCTGTCGACTATGGGCTCAAGGGCGTTTC ATTGCGAGCGATCGACAATGTGACCTTCGCGCTCCGGGCCGGAGAGGCTGTAGGCCTCGTCGGAGAATCTGGCAGCGGGA AGACCACGACTGCAATGGCGATCGCGGGTCTGCTATCTCCCAACGCGCGGGTCAGCGAGGGCGAAGTACGGTATCGCGGA GAGCGACTGCCGATCGATGACGATGCGGCGATGCGGCCACATCGCTGGAGCGAAACGTCCGTTGTCTTCCAGGGTGCAAT GAATGCGCTCAACCCCGTACACCGCATCATCAAGCAGATCGCCGAGCCCTGCATGCTGAAGCTCGGTATGTCGCGGGGCG AGGCAACTGCGCGGGCACGGGAGCTGCTTGAACTCGTTGGCATTCCGACGGATCGCGGTTCCGCCTATCCGCATGAGTTG TCGGGCGGTATGCGCCAAAGGGTGATGATTGCCATGGCGCTGGCGTGCCGCCCCTCGATCGTCATTGGCGATGAGCCGAC CACGGCGCTGGACGTCATTACCCAGGCTCAGATCCTCAAACTGCTCGGGGAGTTGCGATCGCAACTCAACCTTGCCCTGA TCTTGATCACCCACGATCTTTCTGTGGTGGCCGAGGCTTGTGATCGCGTGTTGATCATGTATTCCGGCCGCATCGTCGAG GACGGAACAGTTGCTGAGATCTTCGCCCAACCTAAGCACCCGTACACCAGACTACTGATCGACTCGATCCCGAACCCGGC GAACGGCAAAAAGATGATCCGGCCAATACCGGGTGATCCGCCCAACCTGGTGAATCGACCCTCAGGCTGCGCCTTCCATC CACGTTGCCCGTCGGCCATGGCGGTTTGCGCGACCGAAGTCCCCAGCCTCGATAAGGTCGGGCGGGGACGCGTCGCCTGT CACCTTCACCGGTCCTCGCAAGAAGACAAGGTTGCAGTCCATGCCTGA
Upstream 100 bases:
>100_bases TCGGTGCCCCCGGAGTGTGCGTGCTTTCGGTTTCCCTTAGCTTCGTCCTGATTGGCAACGCCCTCGACGACACGTTCAAC CCACGGCGGAGGGTTATTCC
Downstream 100 bases:
>100_bases CACCATCGACATCCTGCGCCTTGAGAGCCTGCAGGTCCATTTTCCTATCCAGGGCGGGCTGTTCGACCGAGTCCTGGGTC GACCTGCAGGCGCCGTGCGC
Product: ABC transporter, ATP-binding component
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 334
Protein sequence:
>335_residues MTNSSRDKPSVLEVDGLAVDYGLKGVSLRAIDNVTFALRAGEAVGLVGESGSGKTTTAMAIAGLLSPNARVSEGEVRYRG ERLPIDDDAAMRPHRWSETSVVFQGAMNALNPVHRIIKQIAEPCMLKLGMSRGEATARARELLELVGIPTDRGSAYPHEL SGGMRQRVMIAMALACRPSIVIGDEPTTALDVITQAQILKLLGELRSQLNLALILITHDLSVVAEACDRVLIMYSGRIVE DGTVAEIFAQPKHPYTRLLIDSIPNPANGKKMIRPIPGDPPNLVNRPSGCAFHPRCPSAMAVCATEVPSLDKVGRGRVAC HLHRSSQEDKVAVHA
Sequences:
>Translated_335_residues MTNSSRDKPSVLEVDGLAVDYGLKGVSLRAIDNVTFALRAGEAVGLVGESGSGKTTTAMAIAGLLSPNARVSEGEVRYRG ERLPIDDDAAMRPHRWSETSVVFQGAMNALNPVHRIIKQIAEPCMLKLGMSRGEATARARELLELVGIPTDRGSAYPHEL SGGMRQRVMIAMALACRPSIVIGDEPTTALDVITQAQILKLLGELRSQLNLALILITHDLSVVAEACDRVLIMYSGRIVE DGTVAEIFAQPKHPYTRLLIDSIPNPANGKKMIRPIPGDPPNLVNRPSGCAFHPRCPSAMAVCATEVPSLDKVGRGRVAC HLHRSSQEDKVAVHA >Mature_334_residues TNSSRDKPSVLEVDGLAVDYGLKGVSLRAIDNVTFALRAGEAVGLVGESGSGKTTTAMAIAGLLSPNARVSEGEVRYRGE RLPIDDDAAMRPHRWSETSVVFQGAMNALNPVHRIIKQIAEPCMLKLGMSRGEATARARELLELVGIPTDRGSAYPHELS GGMRQRVMIAMALACRPSIVIGDEPTTALDVITQAQILKLLGELRSQLNLALILITHDLSVVAEACDRVLIMYSGRIVED GTVAEIFAQPKHPYTRLLIDSIPNPANGKKMIRPIPGDPPNLVNRPSGCAFHPRCPSAMAVCATEVPSLDKVGRGRVACH LHRSSQEDKVAVHA
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI6005701, Length=221, Percent_Identity=27.1493212669683, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI153792144, Length=221, Percent_Identity=27.6018099547511, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI116734710, Length=212, Percent_Identity=26.8867924528302, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI105990541, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21536376, Length=212, Percent_Identity=25.9433962264151, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI42741659, Length=232, Percent_Identity=26.2931034482759, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI11967971, Length=251, Percent_Identity=26.2948207171315, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI48994883, Length=316, Percent_Identity=46.2025316455696, Blast_Score=283, Evalue=1e-77, Organism=Escherichia coli, GI1789963, Length=315, Percent_Identity=43.8095238095238, Blast_Score=275, Evalue=4e-75, Organism=Escherichia coli, GI1787759, Length=322, Percent_Identity=41.304347826087, Blast_Score=233, Evalue=2e-62, Organism=Escherichia coli, GI145693107, Length=277, Percent_Identity=44.4043321299639, Blast_Score=224, Evalue=6e-60, Organism=Escherichia coli, GI1787500, Length=337, Percent_Identity=39.1691394658754, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=44.4015444015444, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI1789962, Length=295, Percent_Identity=37.2881355932203, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1787548, Length=325, Percent_Identity=35.0769230769231, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI1787758, Length=278, Percent_Identity=38.4892086330935, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=39.1489361702128, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1789891, Length=242, Percent_Identity=35.9504132231405, Blast_Score=147, Evalue=9e-37, Organism=Escherichia coli, GI1789890, Length=246, Percent_Identity=38.2113821138211, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=30.9160305343511, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=35.5932203389831, Blast_Score=135, Evalue=5e-33, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=35.6862745098039, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI87081834, Length=232, Percent_Identity=34.4827586206897, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789032, Length=301, Percent_Identity=31.8936877076412, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1786703, Length=232, Percent_Identity=35.7758620689655, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787712, Length=246, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1787089, Length=248, Percent_Identity=33.8709677419355, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI87081709, Length=223, Percent_Identity=32.7354260089686, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=31.8965517241379, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787370, Length=236, Percent_Identity=31.3559322033898, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=28.8793103448276, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=253, Percent_Identity=28.8537549407115, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1787105, Length=219, Percent_Identity=35.6164383561644, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=30.672268907563, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788644, Length=257, Percent_Identity=31.9066147859922, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=29.535864978903, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI48994943, Length=241, Percent_Identity=29.8755186721992, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=27.6923076923077, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=205, Percent_Identity=32.6829268292683, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790739, Length=267, Percent_Identity=29.2134831460674, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=31.8965517241379, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1789586, Length=251, Percent_Identity=30.2788844621514, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082267, Length=241, Percent_Identity=30.2904564315353, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=33.4883720930233, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=28.0952380952381, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1789864, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786803, Length=288, Percent_Identity=26.7361111111111, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=27.8026905829596, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790467, Length=234, Percent_Identity=29.0598290598291, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788165, Length=229, Percent_Identity=27.0742358078603, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=28.5106382978723, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787143, Length=236, Percent_Identity=31.7796610169492, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI48995001, Length=235, Percent_Identity=29.7872340425532, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1786698, Length=208, Percent_Identity=25.9615384615385, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=25.8928571428571, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=29.2237442922374, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790544, Length=259, Percent_Identity=25.0965250965251, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790534, Length=209, Percent_Identity=27.7511961722488, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787041, Length=251, Percent_Identity=27.8884462151394, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=29.2576419213974, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1786653, Length=241, Percent_Identity=29.8755186721992, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17510237, Length=256, Percent_Identity=25.78125, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193209708, Length=237, Percent_Identity=28.6919831223629, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25146777, Length=240, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI212646699, Length=265, Percent_Identity=27.5471698113208, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533608, Length=208, Percent_Identity=28.8461538461538, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193202349, Length=266, Percent_Identity=27.4436090225564, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71992290, Length=229, Percent_Identity=27.0742358078603, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=278, Percent_Identity=24.8201438848921, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6320214, Length=266, Percent_Identity=26.6917293233083, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=26.9406392694064, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=26.9406392694064, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI28574533, Length=233, Percent_Identity=25.3218884120172, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=261, Percent_Identity=30.2681992337165, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI17136662, Length=284, Percent_Identity=26.7605633802817, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI17647959, Length=221, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574744, Length=174, Percent_Identity=28.735632183908, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI85726357, Length=236, Percent_Identity=27.5423728813559, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI19920532, Length=259, Percent_Identity=26.6409266409266, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI24580930, Length=259, Percent_Identity=26.6409266409266, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35984; Mature: 35853
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNSSRDKPSVLEVDGLAVDYGLKGVSLRAIDNVTFALRAGEAVGLVGESGSGKTTTAMA CCCCCCCCCCEEEECCEEEECCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCHHHHHH IAGLLSPNARVSEGEVRYRGERLPIDDDAAMRPHRWSETSVVFQGAMNALNPVHRIIKQI HHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AEPCMLKLGMSRGEATARARELLELVGIPTDRGSAYPHELSGGMRQRVMIAMALACRPSI HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCE VIGDEPTTALDVITQAQILKLLGELRSQLNLALILITHDLSVVAEACDRVLIMYSGRIVE EECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHEEEEECCEEEC DGTVAEIFAQPKHPYTRLLIDSIPNPANGKKMIRPIPGDPPNLVNRPSGCAFHPRCPSAM CCCHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCHHHCCCCCCCEECCCCCHHH AVCATEVPSLDKVGRGRVACHLHRSSQEDKVAVHA HHHHHCCCCHHHCCCCCEEEEEECCCCCCEEEECC >Mature Secondary Structure TNSSRDKPSVLEVDGLAVDYGLKGVSLRAIDNVTFALRAGEAVGLVGESGSGKTTTAMA CCCCCCCCCEEEECCEEEECCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCHHHHHH IAGLLSPNARVSEGEVRYRGERLPIDDDAAMRPHRWSETSVVFQGAMNALNPVHRIIKQI HHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AEPCMLKLGMSRGEATARARELLELVGIPTDRGSAYPHELSGGMRQRVMIAMALACRPSI HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCE VIGDEPTTALDVITQAQILKLLGELRSQLNLALILITHDLSVVAEACDRVLIMYSGRIVE EECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHEEEEECCEEEC DGTVAEIFAQPKHPYTRLLIDSIPNPANGKKMIRPIPGDPPNLVNRPSGCAFHPRCPSAM CCCHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCHHHCCCCCCCEECCCCCHHH AVCATEVPSLDKVGRGRVACHLHRSSQEDKVAVHA HHHHHCCCCHHHCCCCCEEEEEECCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]