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The map label for this gene is xerD [C]

Identifier: 13475045

GI number: 13475045

Start: 4884578

End: 4885654

Strand: Reverse

Name: xerD [C]

Synonym: mll6045

Alternate gene names: 13475045

Gene position: 4885654-4884578 (Counterclockwise)

Preceding gene: 13475046

Following gene: 13474970

Centisome position: 69.44

GC content: 57.2

Gene sequence:

>1077_bases
ATGCTAAAGGTTTTGTTCCCGAAGTCTTTTTGTCATTACGAATGTTCGCGCTTCGGCGCGGAGCTTGAATTGTTTGCCCG
GTGGTTGCTCGCAGCAGGATATCTACCTGGTGCTGCGACACGTCGCCATGTCCACCGATTGAAGTGCATCCTCGAGGCTA
CGGCCGCTCTTCAGTGTGGCCGGATTCTACTCGGAGCCGAATTGGACGGAGCGTTAGCCTTCGTTCCTGGCGCTCTGCGC
CACGCTTCCACCGAGCGCGCGTATCGCCGCTTCCTCAAGGCAGAGGGGCGGTTCGAAGAAACACAGCCGCAAGGCCCCGT
GGAGCAGTTGCTGCTGCGATATCGAGAATATCTTCTAGACGTGAGGGGGTTAGCACCGGCGACGATCGGTCAGCATTTGG
GAACGATCGAGGAGTTTCTGTCCTTGTCGGCGGGACCGTCACAGGATCTTTCCGCACTGACATCAGAGCACGTCGAAAAC
TTCATTCATACCTTGAGCCGCAGGGTGCTGCGCCAAACACTCCAGCACAAGGTTGCCCATCTGCGCGCTTTCCTGCGCTT
TTGCGCCGATCGTGGTAAGGCAGCGCGAGGGCTAGAGCGCATCGATACGCCCAGAACCTATCGTGGAGAATTGCCACCTC
GTGCCCTTGATTGGGAGGTGATCGAAAAATTGCTGTCCTCGGTCGCGAGGACTGATTATCTCGGCCGCCGTGACCATGCG
ATCCTCCACCTCATGGCCTATTACGGTCTGCGACCTTCTGAGATTGCAGCGCTGACGTTGGACGCGGTCAATTGGAAGCG
ACGTACACTGCGGGTAGAGCAGCGCAAGACTCGTTCCACGCTCGTTCTTCCTTTGGCCGACCAGACCCTTGAAATCCTCG
ACAGATATATCGCGGATGGGCGTCCCTGCGATTTGGTGACGAACTTTCTGTTTGCTAAAGTGCGTAGCCCTGTGGGAGCC
CTGACGAGCTGGGGGATATGCGACATCTTCTCCAAGCGGGCACGGCAAAGCGGCCTGCCGCTAGATGGTGTCTCATCATA
CGCATTGCGCCATTCGTTTTTGCGATGCGATTGCTAG

Upstream 100 bases:

>100_bases
AGAGCCCGCAGACGCGCGACTTCCGACGATACAACTCCACATAACTGAATCACCGTCCACCTAGGATGGCCGCTCCCCTA
AACCTCAACAGGAGAGCGCC

Downstream 100 bases:

>100_bases
GCCGTGGCGTCGGGGTAAAGACGATCGGTGACCTGCTCGGCCATCAAAGCCTTGAGAGCACTTGTGTTTATCTTCGCATC
GAGACGGACATGCTGCGTAC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLKVLFPKSFCHYECSRFGAELELFARWLLAAGYLPGAATRRHVHRLKCILEATAALQCGRILLGAELDGALAFVPGALR
HASTERAYRRFLKAEGRFEETQPQGPVEQLLLRYREYLLDVRGLAPATIGQHLGTIEEFLSLSAGPSQDLSALTSEHVEN
FIHTLSRRVLRQTLQHKVAHLRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWEVIEKLLSSVARTDYLGRRDHA
ILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQTLEILDRYIADGRPCDLVTNFLFAKVRSPVGA
LTSWGICDIFSKRARQSGLPLDGVSSYALRHSFLRCDC

Sequences:

>Translated_358_residues
MLKVLFPKSFCHYECSRFGAELELFARWLLAAGYLPGAATRRHVHRLKCILEATAALQCGRILLGAELDGALAFVPGALR
HASTERAYRRFLKAEGRFEETQPQGPVEQLLLRYREYLLDVRGLAPATIGQHLGTIEEFLSLSAGPSQDLSALTSEHVEN
FIHTLSRRVLRQTLQHKVAHLRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWEVIEKLLSSVARTDYLGRRDHA
ILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQTLEILDRYIADGRPCDLVTNFLFAKVRSPVGA
LTSWGICDIFSKRARQSGLPLDGVSSYALRHSFLRCDC
>Mature_358_residues
MLKVLFPKSFCHYECSRFGAELELFARWLLAAGYLPGAATRRHVHRLKCILEATAALQCGRILLGAELDGALAFVPGALR
HASTERAYRRFLKAEGRFEETQPQGPVEQLLLRYREYLLDVRGLAPATIGQHLGTIEEFLSLSAGPSQDLSALTSEHVEN
FIHTLSRRVLRQTLQHKVAHLRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWEVIEKLLSSVARTDYLGRRDHA
ILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQTLEILDRYIADGRPCDLVTNFLFAKVRSPVGA
LTSWGICDIFSKRARQSGLPLDGVSSYALRHSFLRCDC

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40475; Mature: 40475

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVLFPKSFCHYECSRFGAELELFARWLLAAGYLPGAATRRHVHRLKCILEATAALQCG
CCEEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RILLGAELDGALAFVPGALRHASTERAYRRFLKAEGRFEETQPQGPVEQLLLRYREYLLD
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
VRGLAPATIGQHLGTIEEFLSLSAGPSQDLSALTSEHVENFIHTLSRRVLRQTLQHKVAH
HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWEVIEKLLSSVARTDYLGRRDHA
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
ILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQTLEILDRYIADG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCC
RPCDLVTNFLFAKVRSPVGALTSWGICDIFSKRARQSGLPLDGVSSYALRHSFLRCDC
CCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKVLFPKSFCHYECSRFGAELELFARWLLAAGYLPGAATRRHVHRLKCILEATAALQCG
CCEEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RILLGAELDGALAFVPGALRHASTERAYRRFLKAEGRFEETQPQGPVEQLLLRYREYLLD
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
VRGLAPATIGQHLGTIEEFLSLSAGPSQDLSALTSEHVENFIHTLSRRVLRQTLQHKVAH
HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWEVIEKLLSSVARTDYLGRRDHA
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
ILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQTLEILDRYIADG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCC
RPCDLVTNFLFAKVRSPVGALTSWGICDIFSKRARQSGLPLDGVSSYALRHSFLRCDC
CCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]