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The map label for this gene is nrfC [H]

Identifier: 13474673

GI number: 13474673

Start: 4503703

End: 4504437

Strand: Reverse

Name: nrfC [H]

Synonym: mll5613

Alternate gene names: 13474673

Gene position: 4504437-4503703 (Counterclockwise)

Preceding gene: 13474674

Following gene: 13474672

Centisome position: 64.02

GC content: 65.58

Gene sequence:

>735_bases
ATGACCTGCCTGCCAAGCCAAAGCGGCAAGAAACTCGGCCTGGTCATCGACCTCGATACCTGCGTCGGTTGCCAGGCCTG
CGTCACCGCCTGCAAGGAATGGAACACCGGCGGCCACATGGCGCCGCTGACCGACATCGACCCCTATGGCGGCCATGTCG
ACGGCGTCTGGTTCAACCGCGTGCACAGTTATGAGCACACCACCGAGATGGGCGGGCGCACGGTCAACTTCCCGCGCTCC
TGCCTGCATTGCGAGACGCCGGCCTGCGTCACCGTCTGCCCGACCGGCGCTTCCTACAAGCGCGCCTCGGACGGCATCGT
GCTGATCGACGAGGACAAATGCATCGGCTGCAAATTGTGCAGTTGGGCCTGCCCCTATGGGGCTCGCGAATTCGACACCG
ATGTCGGCGTGATGAAGAAATGCACGCTCTGCGTCGACCGCATCTACAACGACAATCTGGCCGAAGAAGACCGTGTGCCG
GCCTGCGTCGCGGCCTGCCCGACCAGCGCCCGGCACTTCGGTGATCTCGGCGATCCCCACTCCGCCGTCTCGCAACTGGT
GGCGGAGCGCGGCGGCGTCGACCTGATGGCGGAACTCGGCTATCACCCGACCAACAAATATCTGCCGCCGCGCGCCCATA
CGCAGCGTGCCGCATCGGTGCCGGCGAAGGCGCTGGAGCCGGTGCGGGCCGAAGGCGGCTTCCTCGGCTGGGTCGATCGC
ATGCTTTCGAACTGA

Upstream 100 bases:

>100_bases
AGCCGCAATTCGAGCGTTTCGACCAACCGCCGCATTTCGAGCCTTCGCCCGATATCCTTCGCTTCGGCGCCAAATTCCGC
CAAGCAAGAGAGGCCGCGCA

Downstream 100 bases:

>100_bases
CATCCATGCATCCAGCCTTCTCCGTCGTCTTCTTCACCACCGCCACCGGCGCCGGCTATGGGCTGCTGGCGCTGCTTGGG
GTGCTCGGAGGCTTCCAGAT

Product: DMSO reductase chain B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTCLPSQSGKKLGLVIDLDTCVGCQACVTACKEWNTGGHMAPLTDIDPYGGHVDGVWFNRVHSYEHTTEMGGRTVNFPRS
CLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVGVMKKCTLCVDRIYNDNLAEEDRVP
ACVAACPTSARHFGDLGDPHSAVSQLVAERGGVDLMAELGYHPTNKYLPPRAHTQRAASVPAKALEPVRAEGGFLGWVDR
MLSN

Sequences:

>Translated_244_residues
MTCLPSQSGKKLGLVIDLDTCVGCQACVTACKEWNTGGHMAPLTDIDPYGGHVDGVWFNRVHSYEHTTEMGGRTVNFPRS
CLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVGVMKKCTLCVDRIYNDNLAEEDRVP
ACVAACPTSARHFGDLGDPHSAVSQLVAERGGVDLMAELGYHPTNKYLPPRAHTQRAASVPAKALEPVRAEGGFLGWVDR
MLSN
>Mature_243_residues
TCLPSQSGKKLGLVIDLDTCVGCQACVTACKEWNTGGHMAPLTDIDPYGGHVDGVWFNRVHSYEHTTEMGGRTVNFPRSC
LHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVGVMKKCTLCVDRIYNDNLAEEDRVPA
CVAACPTSARHFGDLGDPHSAVSQLVAERGGVDLMAELGYHPTNKYLPPRAHTQRAASVPAKALEPVRAEGGFLGWVDRM
LSN

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787872, Length=232, Percent_Identity=33.6206896551724, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI2367345, Length=205, Percent_Identity=35.1219512195122, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787122, Length=232, Percent_Identity=34.051724137931, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787749, Length=209, Percent_Identity=33.0143540669856, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789370, Length=196, Percent_Identity=32.6530612244898, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790326, Length=192, Percent_Identity=32.2916666666667, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787478, Length=168, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787740, Length=132, Percent_Identity=38.6363636363636, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI226510944, Length=169, Percent_Identity=32.5443786982249, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=33.974358974359, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789067, Length=196, Percent_Identity=30.1020408163265, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787963, Length=175, Percent_Identity=25.1428571428571, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26338; Mature: 26207

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
7.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCLPSQSGKKLGLVIDLDTCVGCQACVTACKEWNTGGHMAPLTDIDPYGGHVDGVWFNR
CCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
VHSYEHTTEMGGRTVNFPRSCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLC
HHHHHHHHHCCCEEECCCHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCEEHH
SWACPYGAREFDTDVGVMKKCTLCVDRIYNDNLAEEDRVPACVAACPTSARHFGDLGDPH
CCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCCCCCHH
SAVSQLVAERGGVDLMAELGYHPTNKYLPPRAHTQRAASVPAKALEPVRAEGGFLGWVDR
HHHHHHHHHCCCCEEHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHCCHHHCCCHHHHHHH
MLSN
HHCC
>Mature Secondary Structure 
TCLPSQSGKKLGLVIDLDTCVGCQACVTACKEWNTGGHMAPLTDIDPYGGHVDGVWFNR
CCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
VHSYEHTTEMGGRTVNFPRSCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLC
HHHHHHHHHCCCEEECCCHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCEEHH
SWACPYGAREFDTDVGVMKKCTLCVDRIYNDNLAEEDRVPACVAACPTSARHFGDLGDPH
CCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCCCCCHH
SAVSQLVAERGGVDLMAELGYHPTNKYLPPRAHTQRAASVPAKALEPVRAEGGFLGWVDR
HHHHHHHHHCCCCEEHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHCCHHHCCCHHHHHHH
MLSN
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]