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The map label for this gene is yciR [C]

Identifier: 13474636

GI number: 13474636

Start: 4466285

End: 4467829

Strand: Reverse

Name: yciR [C]

Synonym: mll5564

Alternate gene names: 13474636

Gene position: 4467829-4466285 (Counterclockwise)

Preceding gene: 13474637

Following gene: 13474625

Centisome position: 63.5

GC content: 62.59

Gene sequence:

>1545_bases
ATGCCTGCCGTCAGCAACCCGAAGCGAACACCCGTGTTTCGACTGCTCACCATAGCAAGTTCGGGCATTGGCAGTTTTAT
CCTCGGCATCTGGGGGCTGAAGCACGGTCTCGGCGACGGGTTTGCCGGCATATCGATGGACATGATGGTCGCGATCATGG
CCGCGCTTTGCGCGCTGGCGGCGTCGGTGGCGGCCATGTCGTTCTTCGCCGGTGTCGATGAATCGGCGGATTTCGTCTTC
AACGAAACCCATTTCGACAAGCTGACCGGACTGCTGGCACGCCCGGCGATGGTCGGCAAGATCGCCGAGGCGGCATGCGC
GACAAGCCGAACCGGGGAACCGGTGTTCCTGATCGACATCGACATCGACCGGTTCAAGCAGATCAACGACGCGATCGGCT
ATACGCAGGGCGACGAGTTGATCCGCGCCTTCACCAAGCGGCTGCAGACCTGCGTGCCCGCACGCGCCATGGTCGGGCGT
ATCGGCGCTGGCGAGTTCGCGGTGCTGCTTCCGGATCATCAGATCCAGGGAACGATGGAAAGCATGGTCGAAAGGCTCAT
CGATGAAATGATGGAGCCCTATGAACTGAGCACCCATCAGCAATCGGTGAGCCTGTCGGTGGGTATCGTTGCCATGCCCA
AGGATGGCGTCGATCCGGTCCTTATCCTGCGCCGCTCCAATCTGGCGCTGCAGAATGCGCGCGCCGGCGGGGTCGGCAAC
TGGTCGGTGTTCGACAGCGAGATGGGGCGTGTCGCCGATCATCGCCAGTGGGTGGAATCCGAACTGCACACCGCTTTCGA
GCGAGGAGACTTCGACCTCCACTATCAGCCGCAGCTCGACCTGCCGACCGGCCGCATCATCGGCTACGAGGCGCTGATCC
GCTGGAACCATCCCGAACGCGGCATGATCCCACCCATGGAGTTCATCCAGATCGCCGAGGAAACCGGCATGATCAACCCG
ATCGGCGAATGGGTTCTGCGCAAGGCTTGCAGCGACGCCCACCATCTGCCGGACGACTGTTTCGTCGCCGTCAACATCTC
GCCGGTTCAGTTCATGACCAAGGACTTCGTCGGCATCGTGCGCGACACGATGAGGGCCACCGGCATCAAGCCGTCGCGGC
TTGAGCTGGAAGTGACCGAGACGGCGATGATGCAGGACCGCGACCGCGCGGCCGCCATACTGAAAGAACTTGCCGAAATG
GGCATCTCCGTTGCCGTCGACGATTTCGGCACCGGCTATTCCAACCTCAGCTACCTCATCGACTTCTCGTTCGGCAAGTT
GAAGATCGACCGCTCCTTCGTCAGCCGCATCGGTACCGATTCCAGCTCAGGCGCTGTTGTCTCGACCATCGTCGGGCTTT
CGCGCGCGCTCGGCGTCAGCATCATCGCCGAAGGCGTCGAGACCGAGAGCCAGGCGACACTGTTGCGGGCCGCCGGCTGC
GAAGTGGTGCAGGGCTACCTGTTCGGCCGGCCGGCACCGCTCAAGTTCAGGCTTGGCGACCAGCACGCCACCGACGAGGT
CCGGCGCGTCGCCAGCCTGCATTAA

Upstream 100 bases:

>100_bases
AGTAAAGAAAATAATCTTCTCCAGTAAAATTGGATTCATTCGCGGAAACTCATTTTAAGAAGATTTCCGCTATAGAGTCC
CGCAATCTGGGGACCTTTGA

Downstream 100 bases:

>100_bases
GCAAGTCAGCGCCGTGCGGAAAACACCTTGAACATGCCGTCGCGGGCAAGCTCGGCATGGCTGGCAAAGGCCGCCGACAG
CACGGACTCATAGGGAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MPAVSNPKRTPVFRLLTIASSGIGSFILGIWGLKHGLGDGFAGISMDMMVAIMAALCALAASVAAMSFFAGVDESADFVF
NETHFDKLTGLLARPAMVGKIAEAACATSRTGEPVFLIDIDIDRFKQINDAIGYTQGDELIRAFTKRLQTCVPARAMVGR
IGAGEFAVLLPDHQIQGTMESMVERLIDEMMEPYELSTHQQSVSLSVGIVAMPKDGVDPVLILRRSNLALQNARAGGVGN
WSVFDSEMGRVADHRQWVESELHTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPERGMIPPMEFIQIAEETGMINP
IGEWVLRKACSDAHHLPDDCFVAVNISPVQFMTKDFVGIVRDTMRATGIKPSRLELEVTETAMMQDRDRAAAILKELAEM
GISVAVDDFGTGYSNLSYLIDFSFGKLKIDRSFVSRIGTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGC
EVVQGYLFGRPAPLKFRLGDQHATDEVRRVASLH

Sequences:

>Translated_514_residues
MPAVSNPKRTPVFRLLTIASSGIGSFILGIWGLKHGLGDGFAGISMDMMVAIMAALCALAASVAAMSFFAGVDESADFVF
NETHFDKLTGLLARPAMVGKIAEAACATSRTGEPVFLIDIDIDRFKQINDAIGYTQGDELIRAFTKRLQTCVPARAMVGR
IGAGEFAVLLPDHQIQGTMESMVERLIDEMMEPYELSTHQQSVSLSVGIVAMPKDGVDPVLILRRSNLALQNARAGGVGN
WSVFDSEMGRVADHRQWVESELHTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPERGMIPPMEFIQIAEETGMINP
IGEWVLRKACSDAHHLPDDCFVAVNISPVQFMTKDFVGIVRDTMRATGIKPSRLELEVTETAMMQDRDRAAAILKELAEM
GISVAVDDFGTGYSNLSYLIDFSFGKLKIDRSFVSRIGTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGC
EVVQGYLFGRPAPLKFRLGDQHATDEVRRVASLH
>Mature_513_residues
PAVSNPKRTPVFRLLTIASSGIGSFILGIWGLKHGLGDGFAGISMDMMVAIMAALCALAASVAAMSFFAGVDESADFVFN
ETHFDKLTGLLARPAMVGKIAEAACATSRTGEPVFLIDIDIDRFKQINDAIGYTQGDELIRAFTKRLQTCVPARAMVGRI
GAGEFAVLLPDHQIQGTMESMVERLIDEMMEPYELSTHQQSVSLSVGIVAMPKDGVDPVLILRRSNLALQNARAGGVGNW
SVFDSEMGRVADHRQWVESELHTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPERGMIPPMEFIQIAEETGMINPI
GEWVLRKACSDAHHLPDDCFVAVNISPVQFMTKDFVGIVRDTMRATGIKPSRLELEVTETAMMQDRDRAAAILKELAEMG
ISVAVDDFGTGYSNLSYLIDFSFGKLKIDRSFVSRIGTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGCE
VVQGYLFGRPAPLKFRLGDQHATDEVRRVASLH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=411, Percent_Identity=33.0900243309002, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=30.4556354916067, Blast_Score=209, Evalue=5e-55,
Organism=Escherichia coli, GI1787055, Length=416, Percent_Identity=26.6826923076923, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=36.25, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=29.3144208037825, Blast_Score=158, Evalue=8e-40,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=37.3390557939914, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=36.1344537815126, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=34.6774193548387, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=35.4430379746835, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=31.9838056680162, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=30.9623430962343, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=243, Percent_Identity=28.3950617283951, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787410, Length=218, Percent_Identity=26.605504587156, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786584, Length=153, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=27.6073619631902, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 56000; Mature: 55869

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVSNPKRTPVFRLLTIASSGIGSFILGIWGLKHGLGDGFAGISMDMMVAIMAALCALA
CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ASVAAMSFFAGVDESADFVFNETHFDKLTGLLARPAMVGKIAEAACATSRTGEPVFLIDI
HHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEEC
DIDRFKQINDAIGYTQGDELIRAFTKRLQTCVPARAMVGRIGAGEFAVLLPDHQIQGTME
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEECCHHHHHHHH
SMVERLIDEMMEPYELSTHQQSVSLSVGIVAMPKDGVDPVLILRRSNLALQNARAGGVGN
HHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCC
WSVFDSEMGRVADHRQWVESELHTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPER
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCC
GMIPPMEFIQIAEETGMINPIGEWVLRKACSDAHHLPDDCFVAVNISPVQFMTKDFVGIV
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHH
RDTMRATGIKPSRLELEVTETAMMQDRDRAAAILKELAEMGISVAVDDFGTGYSNLSYLI
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE
DFSFGKLKIDRSFVSRIGTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGC
EECCCEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCH
EVVQGYLFGRPAPLKFRLGDQHATDEVRRVASLH
HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PAVSNPKRTPVFRLLTIASSGIGSFILGIWGLKHGLGDGFAGISMDMMVAIMAALCALA
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ASVAAMSFFAGVDESADFVFNETHFDKLTGLLARPAMVGKIAEAACATSRTGEPVFLIDI
HHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEEC
DIDRFKQINDAIGYTQGDELIRAFTKRLQTCVPARAMVGRIGAGEFAVLLPDHQIQGTME
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEECCHHHHHHHH
SMVERLIDEMMEPYELSTHQQSVSLSVGIVAMPKDGVDPVLILRRSNLALQNARAGGVGN
HHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCC
WSVFDSEMGRVADHRQWVESELHTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPER
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCC
GMIPPMEFIQIAEETGMINPIGEWVLRKACSDAHHLPDDCFVAVNISPVQFMTKDFVGIV
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHH
RDTMRATGIKPSRLELEVTETAMMQDRDRAAAILKELAEMGISVAVDDFGTGYSNLSYLI
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE
DFSFGKLKIDRSFVSRIGTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGC
EECCCEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCH
EVVQGYLFGRPAPLKFRLGDQHATDEVRRVASLH
HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]