Click here to switch to the map view.

The map label for this gene is ybaB [C]

Identifier: 13474590

GI number: 13474590

Start: 4416193

End: 4416516

Strand: Direct

Name: ybaB [C]

Synonym: mlr5504

Alternate gene names: 13474590

Gene position: 4416193-4416516 (Clockwise)

Preceding gene: 13474589

Following gene: 13474591

Centisome position: 62.77

GC content: 58.02

Gene sequence:

>324_bases
ATGAAAGATCTTCTCGGCCTGATGGGCAAGGCGAAGGAAATGCAGGCCAAGTTCCAGGCCATGCAGGATGAGATCGCCAC
GGTCGAATCCGTCGGCCAGGCCGGCGGTGGCCTGGTCAGCGTCATCTTGAGCGGCAAGTTCGAGATGAAGTCGCTGAAGA
TCGACCCGTCTTTGTTCAAGGAGGATGAGGTCGAGATCCTCGAGGACCTGATACTGGCCGCCCACAACGACGCCAAGGCC
AAGGTCGAGCAAATCATGCAGGAAAAGACCAAGGCGCTGACATCTGGCCTGCCGATCCCGCCAGGAATGAAACTGCCGTT
CTGA

Upstream 100 bases:

>100_bases
TTCCCGACGCGCCGGAGGTAGACGCGACCGAAGCCGAAGTGCCGGTCGAGCCGCCGGCGGATGACGACGAGACCTGACAA
ACCAAGACAAGGACCGGACC

Downstream 100 bases:

>100_bases
TGCATCTCGCCAAAACCGTGCAGCGGTTTTGGGGTAACGACGTGTGTGAAAGTAGAACTCAGCGGCGATGCGCCCATGAC
CGAAGAGCCGTCCGAAAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MKDLLGLMGKAKEMQAKFQAMQDEIATVESVGQAGGGLVSVILSGKFEMKSLKIDPSLFKEDEVEILEDLILAAHNDAKA
KVEQIMQEKTKALTSGLPIPPGMKLPF

Sequences:

>Translated_107_residues
MKDLLGLMGKAKEMQAKFQAMQDEIATVESVGQAGGGLVSVILSGKFEMKSLKIDPSLFKEDEVEILEDLILAAHNDAKA
KVEQIMQEKTKALTSGLPIPPGMKLPF
>Mature_107_residues
MKDLLGLMGKAKEMQAKFQAMQDEIATVESVGQAGGGLVSVILSGKFEMKSLKIDPSLFKEDEVEILEDLILAAHNDAKA
KVEQIMQEKTKALTSGLPIPPGMKLPF

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family

Homologues:

Organism=Escherichia coli, GI1786677, Length=104, Percent_Identity=47.1153846153846, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y5504_RHILO (Q98BM7)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106159.1
- ProteinModelPortal:   Q98BM7
- SMR:   Q98BM7
- GeneID:   1228820
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr5504
- NMPDR:   fig|266835.1.peg.4263
- HOGENOM:   HBG734215
- OMA:   MLQDLIL
- ProtClustDB:   PRK00153
- HAMAP:   MF_00274
- InterPro:   IPR004401
- Gene3D:   G3DSA:3.30.1310.10
- PIRSF:   PIRSF004555
- TIGRFAMs:   TIGR00103

Pfam domain/function: PF02575 DUF149; SSF82607 CHP00103

EC number: NA

Molecular weight: Translated: 11587; Mature: 11587

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLLGLMGKAKEMQAKFQAMQDEIATVESVGQAGGGLVSVILSGKFEMKSLKIDPSLFK
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHCCCCHHHHC
EDEVEILEDLILAAHNDAKAKVEQIMQEKTKALTSGLPIPPGMKLPF
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKDLLGLMGKAKEMQAKFQAMQDEIATVESVGQAGGGLVSVILSGKFEMKSLKIDPSLFK
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHCCCCHHHHC
EDEVEILEDLILAAHNDAKAKVEQIMQEKTKALTSGLPIPPGMKLPF
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968