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The map label for this gene is cycM [H]

Identifier: 13474583

GI number: 13474583

Start: 4409767

End: 4410414

Strand: Reverse

Name: cycM [H]

Synonym: mll5495

Alternate gene names: 13474583

Gene position: 4410414-4409767 (Counterclockwise)

Preceding gene: 13474586

Following gene: 13474582

Centisome position: 62.68

GC content: 65.28

Gene sequence:

>648_bases
ATGGATTCCAACGAAGTCAACAAACTGCTCGCCGGATTGCTCGGAACCGTTTTTGTCGTTTTCTCGGTCGGCCTGGTATC
TGACGCGCTGTTTGCCTCGCCGGCTCCTGAAAAGCCCGGCTTCGCCATCGAGGCCGCGGAGCCGGCCGAAGGCGGCCCGG
CCGCGCCGGCCGCCGAATCCAAGCCGATCGCCGATCTGCTGCAGACCGCCAATGTCGAGGCGGGTGCCGCCGTCTTCAAG
AAATGCCAGGCCTGCCATTCCGGCGAAAAGGGTGGCCCCAACAAGGTCGGCCCCGATCTGTGGGATCTCGTCGATCGTCC
TGTCGCCGAACATGAAGGCTTCGCCTATTCGGCCGGCATGAAGGAGTTTTCCAAGGGCGGCACCGAGAAGTGGACCTATG
ACAACATCAACCACTTCATCACCTCGCCGAAGAAATTCGTGAAGGGCACGGCCATGGGCTTTGCCGGCCTGCCCAAGGAC
GAGGACCGTGCCAACGTCATCGCCTATCTGCGCACGCTGTCGGACAATCCCAAGCCGCTGCCGGCACCAGGCGCCGCCGC
CGACGCCAGCGCGCCCGCCAAGCCTGCCGCTGGCGCCGCACCGGCCAAGCCGGCTGACGGCGCGGCACCAGCCGCGCCGG
CCAAATAA

Upstream 100 bases:

>100_bases
ACCTAGTTTCCGCCCGATTTGACCGGCTCTGGAGGGCAGGTCTCGATACCGACGGACGGAGTGGACGGTTCGGTCCGCCG
GAAAAGGGAGCAAGGGGCGT

Downstream 100 bases:

>100_bases
CCAAATTGTCATAGAAGCGTTCATAGAAAAGCCGGGTTCTGCCCGGCTTTTTCGTTAGGAAAAACGCATATGCGGCGACA
AAGCCGCGCATGGCGGTTTT

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDSNEVNKLLAGLLGTVFVVFSVGLVSDALFASPAPEKPGFAIEAAEPAEGGPAAPAAESKPIADLLQTANVEAGAAVFK
KCQACHSGEKGGPNKVGPDLWDLVDRPVAEHEGFAYSAGMKEFSKGGTEKWTYDNINHFITSPKKFVKGTAMGFAGLPKD
EDRANVIAYLRTLSDNPKPLPAPGAAADASAPAKPAAGAAPAKPADGAAPAAPAK

Sequences:

>Translated_215_residues
MDSNEVNKLLAGLLGTVFVVFSVGLVSDALFASPAPEKPGFAIEAAEPAEGGPAAPAAESKPIADLLQTANVEAGAAVFK
KCQACHSGEKGGPNKVGPDLWDLVDRPVAEHEGFAYSAGMKEFSKGGTEKWTYDNINHFITSPKKFVKGTAMGFAGLPKD
EDRANVIAYLRTLSDNPKPLPAPGAAADASAPAKPAAGAAPAKPADGAAPAAPAK
>Mature_215_residues
MDSNEVNKLLAGLLGTVFVVFSVGLVSDALFASPAPEKPGFAIEAAEPAEGGPAAPAAESKPIADLLQTANVEAGAAVFK
KCQACHSGEKGGPNKVGPDLWDLVDRPVAEHEGFAYSAGMKEFSKGGTEKWTYDNINHFITSPKKFVKGTAMGFAGLPKD
EDRANVIAYLRTLSDNPKPLPAPGAAADASAPAKPAAGAAPAKPADGAAPAAPAK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=107, Percent_Identity=39.2523364485981, Blast_Score=81, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6320796, Length=99, Percent_Identity=40.4040404040404, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6322508, Length=101, Percent_Identity=40.5940594059406, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=41.747572815534, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17137204, Length=107, Percent_Identity=39.2523364485981, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 21863; Mature: 21863

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNEVNKLLAGLLGTVFVVFSVGLVSDALFASPAPEKPGFAIEAAEPAEGGPAAPAAES
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCC
KPIADLLQTANVEAGAAVFKKCQACHSGEKGGPNKVGPDLWDLVDRPVAEHEGFAYSAGM
CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHCCCCHHHHH
KEFSKGGTEKWTYDNINHFITSPKKFVKGTAMGFAGLPKDEDRANVIAYLRTLSDNPKPL
HHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
PAPGAAADASAPAKPAAGAAPAKPADGAAPAAPAK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSNEVNKLLAGLLGTVFVVFSVGLVSDALFASPAPEKPGFAIEAAEPAEGGPAAPAAES
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCC
KPIADLLQTANVEAGAAVFKKCQACHSGEKGGPNKVGPDLWDLVDRPVAEHEGFAYSAGM
CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHCCCCHHHHH
KEFSKGGTEKWTYDNINHFITSPKKFVKGTAMGFAGLPKDEDRANVIAYLRTLSDNPKPL
HHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
PAPGAAADASAPAKPAAGAAPAKPADGAAPAAPAK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]