BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is dppD [H]

Identifier: 13474519

GI number: 13474519

Start: 4336682

End: 4337533

Strand: Direct

Name: dppD [H]

Synonym: mlr5419

Alternate gene names: 13474519

Gene position: 4336682-4337533 (Clockwise)

Preceding gene: 13474518

Following gene: 13474520

Centisome position: 61.63

GC content: 63.62

Gene sequence:

>852_bases
ATGGCGCTGCTCGACATCCAGAACCTCGTCGTCGAATTCCAGACCGCATCCGGTTCCTTCCGCGCCGTCGACGGCGTGTC
GCTGCATGTGGACGAGCGCGAAGTGCTGGCGATCGTCGGCGAATCCGGCTCCGGCAAGTCGGTCTCGATGCTGGCGGTGA
TGGGCCTCTTGCCATGGACCGCCAAGGTCACAGCCGACCGCATGAGCTTCAATGGCCGCGATCTCCTGAAACTGAGCCCG
GCCGAGCGGCGCAAGATCGTCGGCAAGGACATGTCGATGATCTTCCAGGAGCCGATGGCCAGCCTCAATCCGTGCTTCAC
CGTCGGCTTCCAGATCGAGGAGGTGCTGCGTTTCCACATGGGCATGGACAAGGCCCAGCGCCGGGCGCGCGCCATCGAAT
TGTTGAAGCAGGTCGGCATTGCCGAGCCGGCGGAACGGCTGAACTCGTTCCCGCACCAGATGTCGGGCGGCCAGTGCCAG
CGCGTCATGATCGCCATCGCCATTGCCTGCAATCCGAAGCTTTTGATCGCCGACGAGCCGACCACCGCGCTCGACGTCAC
CATCCAGAAGCAGATCCTCGATCTCCTGGTCTCGCTGCAGGCCAAATACGGCATGGGCCTGATCATGATCACCCACAATA
TGGGCGTGGTGGCCGAGACCGCCGACCGCGTCATCGTCCAGTACAAGGGCCGCAAGATGGAAGAGGCCGACGTGCTGTCG
CTGTTTGAATCGCCGAAGAGCAACTACACCCGCGCGTTGCTTTCGGCGCTGCCGGAAAATGCCGTCGGCGACCGCTTGCC
GACCGTCTCTGACATGCTGTTCGAGCCGGCGCCCTCGGGAGCCGCCGCATGA

Upstream 100 bases:

>100_bases
TGACGTTCCCGGGTCTCGCCATCCTCATCACCGTGCTTGCCATCAATCTGATCGGCGACGGCCTGCGCGATGCGCTCGAT
CCCAAGCTCAGGAGGTCATG

Downstream 100 bases:

>100_bases
CCACTGTTGTCGAAGGCAAGAACATCAAGCGCGACTACCATGTCGGCGGCGGGCTGTTCCGCAGCGCGCGCACCGTGCAT
GCGGTGAAGGGCGTTTCCTT

Product: ABC transporter ATP-binding component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MALLDIQNLVVEFQTASGSFRAVDGVSLHVDEREVLAIVGESGSGKSVSMLAVMGLLPWTAKVTADRMSFNGRDLLKLSP
AERRKIVGKDMSMIFQEPMASLNPCFTVGFQIEEVLRFHMGMDKAQRRARAIELLKQVGIAEPAERLNSFPHQMSGGQCQ
RVMIAIAIACNPKLLIADEPTTALDVTIQKQILDLLVSLQAKYGMGLIMITHNMGVVAETADRVIVQYKGRKMEEADVLS
LFESPKSNYTRALLSALPENAVGDRLPTVSDMLFEPAPSGAAA

Sequences:

>Translated_283_residues
MALLDIQNLVVEFQTASGSFRAVDGVSLHVDEREVLAIVGESGSGKSVSMLAVMGLLPWTAKVTADRMSFNGRDLLKLSP
AERRKIVGKDMSMIFQEPMASLNPCFTVGFQIEEVLRFHMGMDKAQRRARAIELLKQVGIAEPAERLNSFPHQMSGGQCQ
RVMIAIAIACNPKLLIADEPTTALDVTIQKQILDLLVSLQAKYGMGLIMITHNMGVVAETADRVIVQYKGRKMEEADVLS
LFESPKSNYTRALLSALPENAVGDRLPTVSDMLFEPAPSGAAA
>Mature_282_residues
ALLDIQNLVVEFQTASGSFRAVDGVSLHVDEREVLAIVGESGSGKSVSMLAVMGLLPWTAKVTADRMSFNGRDLLKLSPA
ERRKIVGKDMSMIFQEPMASLNPCFTVGFQIEEVLRFHMGMDKAQRRARAIELLKQVGIAEPAERLNSFPHQMSGGQCQR
VMIAIAIACNPKLLIADEPTTALDVTIQKQILDLLVSLQAKYGMGLIMITHNMGVVAETADRVIVQYKGRKMEEADVLSL
FESPKSNYTRALLSALPENAVGDRLPTVSDMLFEPAPSGAAA

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=238, Percent_Identity=28.1512605042017, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI105990541, Length=229, Percent_Identity=27.5109170305677, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI156105685, Length=242, Percent_Identity=28.9256198347107, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI9961250, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI116734710, Length=233, Percent_Identity=24.8927038626609, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI171184400, Length=239, Percent_Identity=28.8702928870293, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI42741659, Length=250, Percent_Identity=29.2, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1789963, Length=261, Percent_Identity=57.8544061302682, Blast_Score=317, Evalue=5e-88,
Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=49.8098859315589, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI48994883, Length=269, Percent_Identity=44.9814126394052, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1788506, Length=279, Percent_Identity=45.5197132616487, Blast_Score=224, Evalue=4e-60,
Organism=Escherichia coli, GI1787548, Length=277, Percent_Identity=42.2382671480144, Blast_Score=217, Evalue=6e-58,
Organism=Escherichia coli, GI1787759, Length=265, Percent_Identity=40.7547169811321, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1787500, Length=266, Percent_Identity=42.4812030075188, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1789962, Length=270, Percent_Identity=37.4074074074074, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=40.5982905982906, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787758, Length=237, Percent_Identity=39.662447257384, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=30.9160305343511, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=31.9230769230769, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789891, Length=241, Percent_Identity=34.8547717842324, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1786398, Length=247, Percent_Identity=33.6032388663968, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=34.8547717842324, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=32.0833333333333, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786872, Length=245, Percent_Identity=35.5102040816327, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787029, Length=253, Percent_Identity=32.4110671936759, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787712, Length=248, Percent_Identity=33.4677419354839, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=32.4324324324324, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87081834, Length=239, Percent_Identity=35.1464435146443, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=37.3831775700935, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=32.3529411764706, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081791, Length=258, Percent_Identity=30.2325581395349, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=30.6382978723404, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=26.984126984127, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788761, Length=234, Percent_Identity=29.4871794871795, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=32, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788644, Length=244, Percent_Identity=32.3770491803279, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=29.7674418604651, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=29.5652173913043, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788450, Length=248, Percent_Identity=25, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790162, Length=243, Percent_Identity=26.7489711934156, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=33.0097087378641, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790467, Length=256, Percent_Identity=24.609375, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786319, Length=211, Percent_Identity=29.8578199052133, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=208, Percent_Identity=30.2884615384615, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082267, Length=270, Percent_Identity=25.9259259259259, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789991, Length=245, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082268, Length=240, Percent_Identity=27.5, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=30.0925925925926, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790190, Length=234, Percent_Identity=29.9145299145299, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787972, Length=219, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786654, Length=240, Percent_Identity=27.0833333333333, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=25.8928571428571, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790739, Length=241, Percent_Identity=24.4813278008299, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=29.1479820627803, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193209708, Length=212, Percent_Identity=29.7169811320755, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=225, Percent_Identity=28.4444444444444, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=237, Percent_Identity=27.0042194092827, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=178, Percent_Identity=32.0224719101124, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=227, Percent_Identity=29.0748898678414, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=217, Percent_Identity=26.2672811059908, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=236, Percent_Identity=23.728813559322, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=236, Percent_Identity=23.728813559322, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=236, Percent_Identity=23.728813559322, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6319856, Length=253, Percent_Identity=25.6916996047431, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574150, Length=226, Percent_Identity=26.1061946902655, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007328, Length=226, Percent_Identity=26.1061946902655, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24643674, Length=216, Percent_Identity=25.462962962963, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 30832; Mature: 30701

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLDIQNLVVEFQTASGSFRAVDGVSLHVDEREVLAIVGESGSGKSVSMLAVMGLLPWT
CCEEEHHHHHEEEEECCCCEEEECCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHCCCH
AKVTADRMSFNGRDLLKLSPAERRKIVGKDMSMIFQEPMASLNPCFTVGFQIEEVLRFHM
HHHHHHHHCCCCCCEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHC
GMDKAQRRARAIELLKQVGIAEPAERLNSFPHQMSGGQCQRVMIAIAIACNPKLLIADEP
CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHEEEEEEEEECCCEEEEECCC
TTALDVTIQKQILDLLVSLQAKYGMGLIMITHNMGVVAETADRVIVQYKGRKMEEADVLS
CCEEHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEHHHHHEEEEECCCCCCHHHHHH
LFESPKSNYTRALLSALPENAVGDRLPTVSDMLFEPAPSGAAA
HHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ALLDIQNLVVEFQTASGSFRAVDGVSLHVDEREVLAIVGESGSGKSVSMLAVMGLLPWT
CEEEHHHHHEEEEECCCCEEEECCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHCCCH
AKVTADRMSFNGRDLLKLSPAERRKIVGKDMSMIFQEPMASLNPCFTVGFQIEEVLRFHM
HHHHHHHHCCCCCCEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHC
GMDKAQRRARAIELLKQVGIAEPAERLNSFPHQMSGGQCQRVMIAIAIACNPKLLIADEP
CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHEEEEEEEEECCCEEEEECCC
TTALDVTIQKQILDLLVSLQAKYGMGLIMITHNMGVVAETADRVIVQYKGRKMEEADVLS
CCEEHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEHHHHHEEEEECCCCCCHHHHHH
LFESPKSNYTRALLSALPENAVGDRLPTVSDMLFEPAPSGAAA
HHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]