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The map label for this gene is dppB [H]

Identifier: 13474517

GI number: 13474517

Start: 4334764

End: 4335771

Strand: Direct

Name: dppB [H]

Synonym: mlr5417

Alternate gene names: 13474517

Gene position: 4334764-4335771 (Clockwise)

Preceding gene: 13474516

Following gene: 13474518

Centisome position: 61.61

GC content: 59.92

Gene sequence:

>1008_bases
ATGCTAAAATATATCCTCCACCGAATTGCACTTTTGATCCCGACGCTGGTCGGCATCACGATCTGCGCCTTCGCGTTCGT
CAGGCTGCTGCCCGGCGATCCTATCCTTGCCATGGCCGGCGAACACGGCGTGGCGCCGGCGCGCTACGAAGAGCTCAAGG
AGCAGTTCGGCTACAATCTGCCGATCTGGCAGCAATACACACGCTATGTCGGTGAGGTCGTGACCGGCGATTTCGGCGTC
TCGATTTCGTCCAAGCGCCCGGTGCTCGAGGAGTTCAAGACGCTCTTCCCGGCGACGCTGGAACTGTCATTCTTCGCCAT
GATTTTCGCCATGGTGCTCGGCATTCCGGCCGGCATCTTCGCGGCCGTCAAGCGCGGCTCGTGGTTCGACCAGTCGTTGA
TGGGCACGGCGCTCGTCGGCTACTCCATGCCGATCTTCTGGTGGGGCCTGCTGCTCATCATCTTTTTCTCCGGCTATCTC
GGCTGGACACCGGTCAATGGCCGCATCGACCTGCAGTACTTCTTCAAGCCGATCACCGGCTTCATGACCATCGACACCTT
ACTCTACGGCAAATGGGATGCATTTCGCTCGGTATTGCGCCATCTGGTGCTGCCGACAATTGTGCTCGGTACCATTCCGC
TGGCTGTGATAGCGCGCCAGACGCGCTCCGCCATGCTCGAGGTGCTGGGCGAGGACTACGTGCGGACGGCCCGAGCCAAA
GGGCTTTCGTCAACCCGAGTCATCGGCGTGCATGCTCTGCGCAATGCACTCATCCCGGTGGTCACCACCATCGGCCTGCA
GGTTAGTACGCTGCTCGCCGGCGCCATCCTCACCGAAACGATCTTCTCGTGGCCGGGCATCGGCAGGTGGATGGTCGAAT
CCATATCCAAGCGCGACTATGTCGTCGTGCAGTCTGGCCTGCTGTTGATTGCCCTTATCGTCATGGCCGTGAACTTGATC
GTCGATGTGCTCTATGCAGTCATCAACCCACGCATAAGGGCGGCGTGA

Upstream 100 bases:

>100_bases
CAAGATGGATCCGCTCGGCATTCACCGCTTCGACGGCGTTGACAAGGCCGAATAAGACTATAGAGCGGGGCGGCGCAATG
AAGCGCCGCCCCCCTACATC

Downstream 100 bases:

>100_bases
TGAGCCAGTCGACCGAAATCGCCCCGATGGCCGCCGGCAACCCGGATCGCCTCACCGGCCTCAGGACCTTCTGGTATTAT
TTCTCGGTGAACCGCGGGGC

Product: ABC transporter permease protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLKYILHRIALLIPTLVGITICAFAFVRLLPGDPILAMAGEHGVAPARYEELKEQFGYNLPIWQQYTRYVGEVVTGDFGV
SISSKRPVLEEFKTLFPATLELSFFAMIFAMVLGIPAGIFAAVKRGSWFDQSLMGTALVGYSMPIFWWGLLLIIFFSGYL
GWTPVNGRIDLQYFFKPITGFMTIDTLLYGKWDAFRSVLRHLVLPTIVLGTIPLAVIARQTRSAMLEVLGEDYVRTARAK
GLSSTRVIGVHALRNALIPVVTTIGLQVSTLLAGAILTETIFSWPGIGRWMVESISKRDYVVVQSGLLLIALIVMAVNLI
VDVLYAVINPRIRAA

Sequences:

>Translated_335_residues
MLKYILHRIALLIPTLVGITICAFAFVRLLPGDPILAMAGEHGVAPARYEELKEQFGYNLPIWQQYTRYVGEVVTGDFGV
SISSKRPVLEEFKTLFPATLELSFFAMIFAMVLGIPAGIFAAVKRGSWFDQSLMGTALVGYSMPIFWWGLLLIIFFSGYL
GWTPVNGRIDLQYFFKPITGFMTIDTLLYGKWDAFRSVLRHLVLPTIVLGTIPLAVIARQTRSAMLEVLGEDYVRTARAK
GLSSTRVIGVHALRNALIPVVTTIGLQVSTLLAGAILTETIFSWPGIGRWMVESISKRDYVVVQSGLLLIALIVMAVNLI
VDVLYAVINPRIRAA
>Mature_335_residues
MLKYILHRIALLIPTLVGITICAFAFVRLLPGDPILAMAGEHGVAPARYEELKEQFGYNLPIWQQYTRYVGEVVTGDFGV
SISSKRPVLEEFKTLFPATLELSFFAMIFAMVLGIPAGIFAAVKRGSWFDQSLMGTALVGYSMPIFWWGLLLIIFFSGYL
GWTPVNGRIDLQYFFKPITGFMTIDTLLYGKWDAFRSVLRHLVLPTIVLGTIPLAVIARQTRSAMLEVLGEDYVRTARAK
GLSSTRVIGVHALRNALIPVVTTIGLQVSTLLAGAILTETIFSWPGIGRWMVESISKRDYVVVQSGLLLIALIVMAVNLI
VDVLYAVINPRIRAA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=59.2261904761905, Blast_Score=410, Evalue=1e-116,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=43.2432432432432, Blast_Score=260, Evalue=9e-71,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=43.5975609756098, Blast_Score=237, Evalue=9e-64,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=41.5441176470588, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=34.9253731343284, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=35.3293413173653, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1788504, Length=372, Percent_Identity=27.4193548387097, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37117; Mature: 37117

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYILHRIALLIPTLVGITICAFAFVRLLPGDPILAMAGEHGVAPARYEELKEQFGYNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCC
PIWQQYTRYVGEVVTGDFGVSISSKRPVLEEFKTLFPATLELSFFAMIFAMVLGIPAGIF
CHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
AAVKRGSWFDQSLMGTALVGYSMPIFWWGLLLIIFFSGYLGWTPVNGRIDLQYFFKPITG
HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHH
FMTIDTLLYGKWDAFRSVLRHLVLPTIVLGTIPLAVIARQTRSAMLEVLGEDYVRTARAK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSSTRVIGVHALRNALIPVVTTIGLQVSTLLAGAILTETIFSWPGIGRWMVESISKRDY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCE
VVVQSGLLLIALIVMAVNLIVDVLYAVINPRIRAA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKYILHRIALLIPTLVGITICAFAFVRLLPGDPILAMAGEHGVAPARYEELKEQFGYNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCC
PIWQQYTRYVGEVVTGDFGVSISSKRPVLEEFKTLFPATLELSFFAMIFAMVLGIPAGIF
CHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
AAVKRGSWFDQSLMGTALVGYSMPIFWWGLLLIIFFSGYLGWTPVNGRIDLQYFFKPITG
HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHH
FMTIDTLLYGKWDAFRSVLRHLVLPTIVLGTIPLAVIARQTRSAMLEVLGEDYVRTARAK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSSTRVIGVHALRNALIPVVTTIGLQVSTLLAGAILTETIFSWPGIGRWMVESISKRDY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCE
VVVQSGLLLIALIVMAVNLIVDVLYAVINPRIRAA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]